G786496 (LOC106577539)


Basic Information

Item Value
gene id G786496
gene name LOC106577539
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 26413112 ~ 26413532 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU895770
CCTTCCCTCTGGAAGTCCACATGGCACCACTCCCCGTCGTTCACCTTCTTATTACTGGTCTTCAGCTTGATACTCCCCGACCCCATGTCCATGAGTAGGTATAGGAACCCGTCCAGCAGCTCCATAGCAAAATAGTCTGACTTCATGTCTCGACCCGGCTTCTGCTCTTTAGGACCCTGGGGGCGCCCGTGGCTGAACAGCAGCAGGCCGCTGGGTTCTGTGGTGCGGAAGTCGAAGGAGATGGAGCCTGTTTTCTTGGTGTTCCACTTGGGCAGGGCGATGAAGGACTCGGGGGACTCAAAGGTGACGGGGTCCAGGGCGGCCACGTCCTCACAGCGGAAGACGAGGTCTCCGTTCAGGCTGATCTTCGGGTCCCGCTCGATGGCCAGCCGGGAGAGTTCTAGCTTGAAGTCGTTATTCT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU895770 True 421 TUCP 0.58 1 26413112 26413532

Neighbor

gene id symbol gene type direction distance location
LOC110531839 LOC106577540 coding upstream 580825 25792766 ~ 25832287 (+)
LOC110531838 drap1 coding upstream 621917 25786096 ~ 25791195 (+)
LOC110531834 LOC106577543 coding upstream 655057 25749902 ~ 25758055 (+)
LOC110531831 LOC106577545 coding upstream 700152 25680279 ~ 25712960 (+)
LOC110531832 LOC106577546 coding upstream 734294 25664478 ~ 25678818 (+)
alpk1 alpk1 coding downstream 782989 27196521 ~ 27213187 (+)
epdl1 LOC106577537 coding downstream 800587 27214119 ~ 27220387 (+)
LOC110531847 NA coding downstream 843071 27256603 ~ 27267492 (+)
LOC110531852 rtn3 coding downstream 927166 27340698 ~ 27375922 (+)
LOC110531855 LOC106577526 coding downstream 975359 27388891 ~ 27399023 (+)
G786495 LOC106577539 non-coding upstream 1464 26411286 ~ 26411648 (+)
G786493 nrxn2b non-coding upstream 3893 26408919 ~ 26409219 (+)
G786490 NA non-coding upstream 11597 26401272 ~ 26401515 (+)
G786486 NA non-coding upstream 18012 26394901 ~ 26395100 (+)
G786477 NA non-coding upstream 30293 26382607 ~ 26382819 (+)
G786498 NA non-coding downstream 4812 26418344 ~ 26418570 (+)
G786503 NA non-coding downstream 16450 26429982 ~ 26430216 (+)
G786504 NA non-coding downstream 16764 26430296 ~ 26430568 (+)
G786505 NA non-coding downstream 18030 26431562 ~ 26431832 (+)
G786513 NA non-coding downstream 25819 26439351 ~ 26439753 (+)
G786218 NA other upstream 454245 25874527 ~ 25958867 (+)
G785962 LOC105020693 other upstream 670203 25712997 ~ 25742909 (+)
G786091 NA other upstream 866145 25545231 ~ 25546967 (+)
LOC110531825 LOC106577732 other upstream 880835 25525371 ~ 25532692 (+)
LOC110531788 LOC106577570 other upstream 1461016 24872772 ~ 24952098 (+)
G787022 LOC106577527 other downstream 965800 27379332 ~ 27379664 (+)
taf6l taf6l other downstream 1072262 27480038 ~ 27487523 (+)
rbpjb LOC106577485 other downstream 2926449 29248127 ~ 29342203 (+)
LOC110531891 NA other downstream 3869143 30282637 ~ 30288163 (+)
G793757 LOC107579696 other downstream 5182464 31595996 ~ 31596918 (+)

Expression


Co-expression Network