Gene
RNA
| Item | Value |
|---|---|
| gene id | G786514 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048573.1 |
| NCBI id | CM023227.2 |
| chromosome length | 79455637 |
| location | 26439859 ~ 26440082 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| Transposable element Tcb1 transposase |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU895788 | True | 224 | lncRNA | 0.39 | 1 | 26439859 | 26440082 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110531839 | LOC106577540 | coding | upstream | 607572 | 25792766 ~ 25832287 (+) |
| LOC110531838 | drap1 | coding | upstream | 648664 | 25786096 ~ 25791195 (+) |
| LOC110531834 | LOC106577543 | coding | upstream | 681804 | 25749902 ~ 25758055 (+) |
| LOC110531831 | LOC106577545 | coding | upstream | 726899 | 25680279 ~ 25712960 (+) |
| LOC110531832 | LOC106577546 | coding | upstream | 761041 | 25664478 ~ 25678818 (+) |
| alpk1 | alpk1 | coding | downstream | 756439 | 27196521 ~ 27213187 (+) |
| epdl1 | LOC106577537 | coding | downstream | 774037 | 27214119 ~ 27220387 (+) |
| LOC110531847 | NA | coding | downstream | 816521 | 27256603 ~ 27267492 (+) |
| LOC110531852 | rtn3 | coding | downstream | 900616 | 27340698 ~ 27375922 (+) |
| LOC110531855 | LOC106577526 | coding | downstream | 948809 | 27388891 ~ 27399023 (+) |
| G786513 | NA | non-coding | upstream | 106 | 26439351 ~ 26439753 (+) |
| G786505 | NA | non-coding | upstream | 8027 | 26431562 ~ 26431832 (+) |
| G786504 | NA | non-coding | upstream | 9291 | 26430296 ~ 26430568 (+) |
| G786503 | NA | non-coding | upstream | 9643 | 26429982 ~ 26430216 (+) |
| G786498 | NA | non-coding | upstream | 21289 | 26418344 ~ 26418570 (+) |
| G786522 | NA | non-coding | downstream | 11588 | 26451670 ~ 26451891 (+) |
| G786525 | NA | non-coding | downstream | 16511 | 26456593 ~ 26456934 (+) |
| G786526 | LOC106577539 | non-coding | downstream | 17656 | 26457738 ~ 26458028 (+) |
| G786532 | NA | non-coding | downstream | 27997 | 26468079 ~ 26468425 (+) |
| G786534 | NA | non-coding | downstream | 31886 | 26471968 ~ 26472347 (+) |
| G786496 | LOC106577539 | other | upstream | 26327 | 26413112 ~ 26413532 (+) |
| G786218 | NA | other | upstream | 480992 | 25874527 ~ 25958867 (+) |
| G785962 | LOC105020693 | other | upstream | 696950 | 25712997 ~ 25742909 (+) |
| G786091 | NA | other | upstream | 892892 | 25545231 ~ 25546967 (+) |
| LOC110531825 | LOC106577732 | other | upstream | 907582 | 25525371 ~ 25532692 (+) |
| G787022 | LOC106577527 | other | downstream | 939250 | 27379332 ~ 27379664 (+) |
| taf6l | taf6l | other | downstream | 1045712 | 27480038 ~ 27487523 (+) |
| rbpjb | LOC106577485 | other | downstream | 2899899 | 29248127 ~ 29342203 (+) |
| LOC110531891 | NA | other | downstream | 3842593 | 30282637 ~ 30288163 (+) |
| G793757 | LOC107579696 | other | downstream | 5155914 | 31595996 ~ 31596918 (+) |
