XLOC_027036


Basic Information

Item Value
gene id XLOC_027036
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 4963839 ~ 4966550 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057567
ATCATGTGTTCTGTCGCTGCTGGGGGCGTGTCTCTGTGTGTCTGTCAGTGCGTGACGCCGTCTAGTGGAGCGCTGGAGAACTGCAGTTCAGGATCAACACGAGCTGCAGCAGCACACAGGAGACTGAAGCTTTAAACTCATCCAGTTGTAAACAAAGTCATCATTTTGACAGGATTTCGACTCGCAAAACATCaTGTCTTCTGGTGATGGATCTACACTGATATCTGTTCATTACGCTGCACATGTCGTCTCTCTCTCGTCTCTGATGGACTCAGTTCAGCTCATGCAGCTCTCTGAAACATGCTGAGGATTTCAAGAAGAGAGAAGCCATGTGCAGGATCTGGAAATACAGCTTTACATGTGAACTGAAGCCATGAGGAAGAGGAAGGTGGTTCTTCATCATATCCTCACTGATGAAGCCCTGACTTTACACTCTTTACCTATAATGTCCACCTGATTACGGGCCTGTTTCAATACACACACGTCTGCTCTTGAACACATCAAAGCATCTGAACATGATATCTGAGGCTGAACGTTTCCCATCAGGCATCATGTTCTAGTTCTAGTCTTCAGTGATTATTAATGTCTGCTGATTATTAATGTCTGATGATTGTTAATGTCTGCTGATTATTAATGTCTGATGATTATTAATGTCTGTCATCTAAACTGAGCTTGTTGATTTGGTCAGACAGAATCAGCTAAAGTAAGATGCTCTTACCGTCTGGTTCTTCTAGACGTCTCTTCTAGCTCAGGCTGAATGTCTGTGTGAAGATAAAGAGACTCGAGTGGTGATGATTGATGCTTTTCAATATTTCAgctcatttgttttaaagatcagCTTAAACTATATTGTAGATTCATCAcatcagcgccctctagtggagaaaCACTGACATCTCAGGATTTTGTTGAGCATCTTTCTAAAATCAGGATGGCAGAAAAATGTGTGCTCTGAACCACTGATTCAATCAAAGAGTCAAAATAAAGATTCAAATCAAAGAATCAATTTAAAGAATCAAATTAAAGATTCAAATGAAAGATTCAGAGTTTAATGAATCAGTGATTCAAAAGCAGCATCACTGCATTTTAGAGATTTGTCTCACCTATGTTTGAGTCGCGTCTTCTCTTCACACTCCTTTACTTTCCATCTGTGCTgtgaataaaaacatacaaacattaaG
>TCONS_00053302
GACGCCGTCTAGTGGAGCGCTGGAGAACTGCAGTTCAGGATCAACACGAGCTGCAGCAGCACACAGGAGACTGAAGCTTTAAACTCATCCAGTTGTAAACAAAGTCATCATTTTGACAGGATTTCGACTCGCAAAACATCaTGTCTTCTGGTGATGGATCTACACTGATATCTGTTCATTACGCTGCACATGTCGTCTCTCTCTCGTCTCTGATGGACTCAGTTCAGCTCATGCAGCTCTCTGAAACATGCTGAGGATTTCAAGAAGAGAGAAGCCATGTGCAGGATCTGGAAATACAGCTTTACATGTGAACTGAAGCCATGAGGAAGAGGAAGGTGGTTCTTCATCATATCCTCACTGATGAAGCCCTGACTTTACACTCTTTACCTATAATGTCCACCTGATTACGGGCCTGTTTCAATACACACACGTCTGCTCTTGAACACATCAAAGCATCTGAACATGATATCTGAGGCTGAACGTTTCCCATCAGGCATCATGTTCTAGTTCTAGTCTTCAGTGTTAAAGTTATGCTGATAAGATCTATAACCTGACAGTAAAAATAAAGAATTGCAGCATTTATGACTGTCAGAGCAGTCAGATTGAGCTCATTACTGTCACCTCATTTACAGATAATAAACTACTGCTGCAGGTAAAGTGTAGACAGAGCACACGTGTCCTGTAAGAGCATCAGACATGTCGACTCCTGCAGTCTGATATTGAACACTTGATCAAACACAGAAAACAGCAGCAAGAACACAAGAGCTCAAAGCAAAGACAGCAAGTGTTGCTATTAAGACAGGCCCGATTTTACACGTCACTAACTTATTGATTATTAATGTCTGCTGATTATTAATGTCTGCTGATTGTTAATGTCTGCTGATTATTAATGTCTGATGATTATTAATGTCTGCTGATTATTAATGTCTGATGATTGTTAATGTCTGCTGATTATTAATGTCTGATGATTATTAATGTCTGCTGATTATTAATGTCTGATGATTATTAATGTCTGATGATTTAATGTCTGCTGATTATTAATGTCTGATGATTATTAATGTCTGATGATTATTAATGTCTGATGATTATTAATGTCTGATGATTATTCATGTCTGATGATTATTCATGTCTGTCATCTAAACTGAGCTTGTTGATTTGGTCAGACAGAATCAGCTAAAGTAAGATGCTCTTACCGTCTGGTTCTTCTAGACGTCTCTTCTAGCTCAGGCTGAATGTCTGTGTGAAGATAAAGAGACTCGAGTGGTGATGATTGATGCTTTTCAATATTTCAgctcatttgttttaaagatcagCTTAAACTATATTGTAGATTCATCAcatcagcgccctctagtggagaaaCACTGACATCTCAGGATTTTGTTGAGCATCTTTCTAAAATCAGGATGGCAGAAAAATGTGTGCTCTGAACCACTGATTCAATCAAAGAGTCAAAATAAAGATTCAAATCAAAGAATCAATTTAAAGAATCAAATTAAAGATTCAAATGAAAGATTCAGAGTTTAATGAATCAGTGATTCAAAAGCAGCATCACTGCATTTTAGAGATTTGTCTCACCTATGTTTGAGTCGCGTCTTCTCTTCACACTCCTTTACTTTCCATCTGTGCTgtgaataaaaacatacaaacattaaG
>TCONS_00053303
CGCCGTCTAGTGGAGCGCTGGAGAACTGCAGTTCAGGATCAACACGAGCTGCAGCAGCACACAGGAGACTGAAGCTTTAAACTCATCCAGTTGTAAACAAAGTCATCATTTTGACAGGATTTCGACTCGCAAAACATCGTGGGTTAACTCTGTGCACTCAACTGAGAGGaTGTCTTCTGGTGATGGATCTACACTGATATCTGTTCATTACGCTGCACATGTCGTCTCTCTCTCGTCTCTGATGGACTCAGTTCAGCTCATGCAGCTCTCTGAAACATGCTGAGGATTTCAAGAAGAGAGAAGCCATGTGCAGGATCTGGAAATACAGCTTTACATGTGAACTGAAGCCATGAGGAAGAGGAAGGTGGTTCTTCATCATATCCTCACTGATGAAGCCCTGACTTTACACTCTTTACCTATAATGTCCACCTGATTACGGGCCTGTTTCAATACACACACGTCTGCTCTTGAACACATCAAAGCATCTGAACATGATATCTGAGGCTGAACGTTTCCCATCAGGCATCATGTTCTAGTTCTAGTCTTCAGTGTTAAAGTTATGCTGATAAGATCTATAACCTGACAGTAAAAATAAAGAATTGCAGCATTTATGACTGTCAGAGCAGTCAGATTGAGCTCATTACTGTCACCTCATTTACAGATAATAAACTACTGCTGCAGGTAAAGTGTAGACAGAGCACACGTGTCCTGTAAGAGCATCAGACATGTCGACTCCTGCAGTCTGATATTGAACACTTGATCAAACACAGAAAACAGCAGCAAGAACACAAGAGCTCAAAGCAAAGACAGCAAGTGTTGCTATTAAGACAGGCCCGATTTTACACGTCACTAACTTATTGATTATTAATGTCTGCTGATTATTAATGTCTGCTGATTGTTAATGTCTGCTGATTATTAATGTCTGATGATTATTAATGTCTGCTGATTATTAATGTCTGATGATTGTTAATGTCTGCTGATTATTAATGTCTGATGATTATTAATGTCTGCTGATTATTAATGTCTGATGATTATTAATGTCTGATGATTTAATGTCTGCTGATTATTAATGTCTGATGATTATTAATGTCTGATGATTATTAATGTCTGATGATTATTAATGTCTGATGATTATTCATGTCTGATGATTATTCATGTCTGTCATCTAAACTGAGCTTGTTGATTTGGTCAGACAGAATCAGCTAAAGTAAGATGCTCTTACCGTCTGGTTCTTCTAGACGTCTCTTCTAGCTCAGGCTGAATGTCTGTGTGAAGATAAAGAGACTCGAGTGGTGATGATTGATGCTTTTCAATATTTCAgctcatttgttttaaagatcagCTTAAACTATATTGTAGATTCATCAcatcagcgccctctagtggagaaaCACTGACATCTCAGGATTTTGTTGAGCATCTTTCTAAAATCAGGATGGCAGAAAAATGTGTGCTCTGAACCACTGATTCAATCAAAGAGTCAAAATAAAGATTCAAATCAAAGAATCAATTTAAAGAATCAAATTAAAGATTCAAATGAAAGATTCAGAGTTTAATGAATCAGTGATTCAAAAGCAGCATCACTGCATTTTAGAGATTTGTCTCACCTATGTTTGAGTCGCGTCTTCTCTTCACACTCCTTTACTTTCCATCTGTGCTgtgaataaaaacatacaaacattaaG
>TCONS_00057568
ATGGACGTCAGCCTTTCTGATCCTGCACTCAGAACTGAATCAGTGGATGCAGCATCTGTTCAGCTCATGCAGCTCTCTGAAACATGCTGAGGATTTCAAGAAGAGAGAAGCCATGTGCAGGATCTGGAAATACAGCTTTACATGTGAACTGAAGCCATGAGGAAGAGGAAGGTGGTTCTTCATCATATCCTCACTGATGAAGCCCTGACTTTACACTCTTTACCTATAATGTCCACCTGATTACGGGCCTGTTTCAATACACACACGTCTGCTCTTGAACACATCAAAGCATCTGAACATGATATCTGAGGCTGAACGTTTCCCATCAGGCATCATGTTCTAGTTCTAGTCTTCAGTGTTAAAGTTATGCTGATAAGATCTATAACCTGACAGTAAAAATAAAGAATTGCAGCATTTATGACTGTCAGAGCAGTCAGATTGAGCTCATTACTGTCACCTCATTTACAGATAATAAACTACTGCTGCAGGTAAAGTGTAGACAGAGCACACGTGTCCTGTAAGAGCATCAGACATGTCGACTCCTGCAGTCTGATATTGAACACTTGATCAAACACAGAAAACAGCAGCAAGAACACAAGAGCTCAAAGCAAAGACAGCAAGTGTTGCTATTAAGACAGGCCCGATTTTACACGTCACTAACTTATTGATTATTAATGTCTGCTGATTATTAATGTCTGCTGATTGTTAATGTCTGCTGATTATTAATGTCTGATGATTATTAATGTCTGCTGATTATTAATGTCTGATGATTGTTAATGTCTGCTGATTATTAATGTCTGATGATTATTAATGTCTGCTGATTATTAATGTCTGATGATTATTAATGTCTGATGATTTAATGTCTGCTGATTATTAATGTCTGATGATTATTAATGTCTGATGATTATTAATGTCTGATGATTATTAATGTCTGATGATTATTCATGTCTGATGATTATTCATGTCTGTCATCTAAACTGAGCTTGTTGATTTGGTCAGACAGAATCAGCTAAAGTAAGATGCTCTTACCGTCTGGTTCTTCTAGACGTCTCTTCTAGCTCAGGCTGAATGTCTGTGTGAAGATAAAGAGACTCGAGTGGTGATGATTGATGCTTTTCAATATTTCAgctcatttgttttaaagatcagCTTAAACTATATTGTAGATTCATCAcatcagcgccctctagtggagaaaCACTGACATCTCAGGATTTTGTTGAGCATCTTTCTAAAATCAGGATGGCAGAAAAATGTGTGCTCTGAACCACTGATTCAATCAAAGAGTCAAAATAAAGATTCAAATCAAAGAATCAATTTAAAGAATCAAATTAAAGATTCAAATGAAAGATTCAGAGTTTAATGAATCAGTGATTCAAAAGCAGCATCACTGCATTTTAGAGATTTGTCTCACCTATGTTTGAGTCGCGTCTTCTCTTCACACTCCTTTACTTTCCATCTGTGCTgtgaataaaaacatacaaacattaaG

Function

GO:

id name namespace
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0035295 tube development biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0060429 epithelium development biological_process
GO:0010467 gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0021983 pituitary gland development biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005844 polysome cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057567 False 1181 lncRNA 0.40 4 4963839 4966550
TCONS_00053302 False 1656 lncRNA 0.38 2 4963892 4966550
TCONS_00053303 False 1685 lncRNA 0.38 2 4963894 4966550
TCONS_00057568 True 1492 lncRNA 0.37 2 4964940 4966550

Neighbor

gene id symbol gene type direction distance location
XLOC_027035 NA coding upstream 1217 4938766 ~ 4962622 (+)
XLOC_027034 NA coding upstream 37778 4832804 ~ 4926061 (+)
XLOC_027033 slc13a4 coding upstream 131690 4803698 ~ 4832149 (+)
XLOC_027032 NA coding upstream 248678 4711163 ~ 4715161 (+)
XLOC_027031 CABZ01020834.1 coding upstream 272998 4690726 ~ 4690841 (+)
XLOC_027037 ccnd2b coding downstream 166401 5132951 ~ 5150347 (+)
XLOC_027038 tigarb coding downstream 189567 5156117 ~ 5161877 (+)
XLOC_027039 fgf6b coding downstream 214100 5180650 ~ 5183337 (+)
XLOC_027040 fgf23 coding downstream 226648 5193198 ~ 5195027 (+)
XLOC_027041 rad51ap1 coding downstream 229919 5196469 ~ 5203343 (+)
XLOC_027030 FP236161.1 non-coding upstream 377955 4585101 ~ 4585884 (+)
XLOC_027046 NA non-coding downstream 336399 5302949 ~ 5304672 (+)
XLOC_027052 BX324164.1 non-coding downstream 454356 5420906 ~ 5456058 (+)
XLOC_027053 NA non-coding downstream 458310 5424860 ~ 5456948 (+)
XLOC_027054 NA non-coding downstream 479219 5445769 ~ 5447230 (+)
XLOC_027063 CU571169.1 non-coding downstream 858818 5825368 ~ 5826340 (+)

Expression


Co-expression Network