G786952


Basic Information

Item Value
gene id G786952
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 27245570 ~ 27245845 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU896250
AGtcaaaagtttgtgagtgtttttggtgacaagccaaatttcttcagcctcctgaggttgaagaggcgttgttgcgccttcttcaccacactgtctgtgtgggtggaccatttcagtttgtccgtgatgtgtacgccgagaacttaaaactttccaccttctccactactgtccagttgatgtggataggggggtgctccctctgctgtttcctgaagtccacaatcatctcctttgttttgttgatgttgagtgtgaggttattttcctggcacc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU896250 True 276 lncRNA 0.47 1 27245570 27245845

Neighbor

gene id symbol gene type direction distance location
epdl1 LOC106577537 coding upstream 25183 27214119 ~ 27220387 (+)
alpk1 alpk1 coding upstream 32383 27196521 ~ 27213187 (+)
LOC110531839 LOC106577540 coding upstream 1413283 25792766 ~ 25832287 (+)
LOC110531838 drap1 coding upstream 1454375 25786096 ~ 25791195 (+)
LOC110531834 LOC106577543 coding upstream 1487515 25749902 ~ 25758055 (+)
LOC110531847 NA coding downstream 10758 27256603 ~ 27267492 (+)
LOC110531852 rtn3 coding downstream 94853 27340698 ~ 27375922 (+)
LOC110531855 LOC106577526 coding downstream 143046 27388891 ~ 27399023 (+)
LOC110531857 LOC106577522 coding downstream 161456 27407301 ~ 27438764 (+)
LOC110531858 LOC106577523 coding downstream 193197 27439042 ~ 27471435 (+)
G786877 NA non-coding upstream 174626 27070729 ~ 27070944 (+)
G786799 NA non-coding upstream 294580 26950789 ~ 26950990 (+)
G786798 NA non-coding upstream 295092 26950265 ~ 26950478 (+)
G786797 NA non-coding upstream 311361 26933967 ~ 26934209 (+)
G786783 NA non-coding upstream 338929 26906228 ~ 26906641 (+)
G786965 NA non-coding downstream 31933 27277778 ~ 27277986 (+)
G786966 NA non-coding downstream 32842 27278687 ~ 27283799 (+)
G786968 LOC106577532 non-coding downstream 46045 27291890 ~ 27292246 (+)
G786980 NA non-coding downstream 60052 27305897 ~ 27306937 (+)
G786999 NA non-coding downstream 90419 27336264 ~ 27336524 (+)
G786496 LOC106577539 other upstream 832038 26413112 ~ 26413532 (+)
G786218 NA other upstream 1286703 25874527 ~ 25958867 (+)
G785962 LOC105020693 other upstream 1502661 25712997 ~ 25742909 (+)
G786091 NA other upstream 1698603 25545231 ~ 25546967 (+)
LOC110531825 LOC106577732 other upstream 1713293 25525371 ~ 25532692 (+)
G787022 LOC106577527 other downstream 133487 27379332 ~ 27379664 (+)
taf6l taf6l other downstream 239949 27480038 ~ 27487523 (+)
rbpjb LOC106577485 other downstream 2094136 29248127 ~ 29342203 (+)
LOC110531891 NA other downstream 3036830 30282637 ~ 30288163 (+)
G793757 LOC107579696 other downstream 4350151 31595996 ~ 31596918 (+)

Expression


Co-expression Network