G786966


Basic Information

Item Value
gene id G786966
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 27278687 ~ 27283799 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU896264
AAGATATTCCGTTTTAATAACAATCAAGCAACATTGCAAGGACTATTCATTCAGGCTAGACCAAAAACAGGGCTGACAAACCAATTCCAAAAATAGAGTAAAAATACAAATTGTATATCATCATCTAACATCATGTATTCTTTTTTCTCATTAAGCAACAACAAGAGAACAGAAGGCGTGGTGATGTTGCAGAGGCGATATAAGCACTGCACACAGCTACAGATCATAAGCAAGGAGGGGAGAGGTTGTTAACAGAACAATCACGCATACGATCAGAATCAGAAGTAGTTCAGAGTATCTTTTTAAACCAACTCACTCTAGGATCCAAAGTCCTATTCCCTGTTGCATCCTCATGGACCTAAATTAATTTGCATCTGGGGAAAAAGTTAATTAGAAACAGCTTACAgggtttgaaaaaaaaaaaatacaaaatacaattatAGGGGATTAGAAATTATGCAAACAAATTGATAGAACCCAAAACCTCTGAAATCAGAACAGTAAAAGATCACTGTAAATGAAAACAAATAGTTACTAAGCTTCAGCTCCAGTCCAGTCGGCAAACCAAAGCTTTTGTTTGAGGTGATTTATTTGGTGTGAGAGATGGTGAAACAGTTATAAGCCAACCATGGAGGGGAGTAAGCCCTGCAAAATAGATACAAGGCATACCATATACTCTATGCACAGCAACAGTGTTGGATGGACACAGAGAGCCTACACAGTCAACAAAAACACGTAACttttaaaaacagaaaaattCTGTAAAGAAAATGTACAAATTCAACCACACCACCTCCCTTGTTTGAGGAGTTTCTCTGCACGTTAACCAGGACTGTGATTAAGAGAGTATAGCACAGGTCATGTCATTTTACTGAACAACTATATGCCCTGGGCAGAGCTGCGTATCAGTCCATTGGGTAGCTGGTTGTGTGGTGTGCTGCGAGTCCATGGTGTTGGGTAAAATCTGGGAGGGCTGTGTGGTTGAGACTGAGGAACCTGGGGGGGTACAGAGGGTGTTTAATTctgagggggtggtggtggtggtgcgggGGGCATACCGAAGGGGGGCATGCCCGTCACCCCCATCCCCATCATGGTGACAAAGTTGGAGGGGTCCATGggcggagggggaggag
>TU896265
AAGATATTCCGTTTTAATAACAATCAAGCAACATTGCAAGGACTATTCATTCAGGCTAGACCAAAAACAGGGCTGACAAACCAATTCCAAAAATAGAGTAAAAATACAAATTGTATATCATCATCTAACATCATGTATTCTTTTTTCTCATTAAGCAACAACAAGAGAACAGAAGGCGTGGTGATGTTGCAGAGGCGATATAAGCACTGCACACAGCTACAGATCATAAGCAAGGAGGGGAGAGGTTGTTAACAGAACAATCACGCATACGATCAGAATCAGAAGTAGTTCAGAGTATCTTTTTAAACCAACTCACTCTAGGATCCAAAGTCCTATTCCCTGTTGCATCCTCATGGACCTAAATTAATTTGCATCTGGGGAAAAAGTTAATTAGAAACAGCTTACAgggtttgaaaaaaaaaaaatacaaaatacaattatAGGGGATTAGAAATTATGCAAACAAATTGATAGAACCCAAAACCTCTGAAATCAGAACAGTAAAAGATCACTGTAAATGAAAACAAATAGTTACTAAGCTTCAGCTCCAGTCCAGTCGGCAAACCAAAGCTTTTGTTTGAGGTGATTTATTTGGTGTGAGAGATGGTGAAACAGTTATAAGCCAACCATGGAGGGGAGTAAGCCCTGCAAAATAGATACAAGGCATACCATATACTCTATGCACAGCAACAGTGTTGGATGGACACAGAGAGCCTACACAGTCAACAAAAACACGTAACttttaaaaacagaaaaattCTGTAAAGAAAATGTACAAATTCAACCACACCACCTCCCTTGTTTGAGGAGTTTCTCTGCACGTTAACCAGGACTGTGATTAAGAGAGTATAGCACAGGTCATGTCATTTTACTGAACAACTATATGCCCTGGGCAGAGCTGCGTATCAGTCCATTGGGTAGCTGGTTGTGTGGTGTGCTGCGAGTCCATGGTGTTGGGTAAAATCTGGGAGGGCTGTGTGGTTGAGACTGAGGAACCTGGGGGGGTACAGAGGGTGTTTAATTctgagggggtggtggtggtgttttgtacacaaatttgtttacatccctgttggtgagcatttct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU896264 False 1136 lncRNA 0.42 2 27278687 27280021
TU896265 True 1087 lncRNA 0.40 3 27278687 27283799

Neighbor

gene id symbol gene type direction distance location
LOC110531847 NA coding upstream 11195 27256603 ~ 27267492 (+)
epdl1 LOC106577537 coding upstream 58300 27214119 ~ 27220387 (+)
alpk1 alpk1 coding upstream 65500 27196521 ~ 27213187 (+)
LOC110531839 LOC106577540 coding upstream 1446400 25792766 ~ 25832287 (+)
LOC110531838 drap1 coding upstream 1487492 25786096 ~ 25791195 (+)
LOC110531852 rtn3 coding downstream 56899 27340698 ~ 27375922 (+)
LOC110531855 LOC106577526 coding downstream 105092 27388891 ~ 27399023 (+)
LOC110531857 LOC106577522 coding downstream 123502 27407301 ~ 27438764 (+)
LOC110531858 LOC106577523 coding downstream 155243 27439042 ~ 27471435 (+)
taf6l taf6l coding downstream 196239 27480038 ~ 27487523 (+)
G786965 NA non-coding upstream 701 27277778 ~ 27277986 (+)
G786952 NA non-coding upstream 32842 27245570 ~ 27245845 (+)
G786877 NA non-coding upstream 207743 27070729 ~ 27070944 (+)
G786799 NA non-coding upstream 327697 26950789 ~ 26950990 (+)
G786798 NA non-coding upstream 328209 26950265 ~ 26950478 (+)
G786968 LOC106577532 non-coding downstream 8091 27291890 ~ 27292246 (+)
G786980 NA non-coding downstream 22098 27305897 ~ 27306937 (+)
G786999 NA non-coding downstream 52465 27336264 ~ 27336524 (+)
G787002 NA non-coding downstream 92353 27376152 ~ 27377469 (+)
G787027 NA non-coding downstream 100917 27384716 ~ 27384982 (+)
G786496 LOC106577539 other upstream 865155 26413112 ~ 26413532 (+)
G786218 NA other upstream 1319820 25874527 ~ 25958867 (+)
G785962 LOC105020693 other upstream 1535778 25712997 ~ 25742909 (+)
G786091 NA other upstream 1731720 25545231 ~ 25546967 (+)
LOC110531825 LOC106577732 other upstream 1746410 25525371 ~ 25532692 (+)
G787022 LOC106577527 other downstream 95533 27379332 ~ 27379664 (+)
rbpjb LOC106577485 other downstream 2056182 29248127 ~ 29342203 (+)
LOC110531891 NA other downstream 2998876 30282637 ~ 30288163 (+)
G793757 LOC107579696 other downstream 4312197 31595996 ~ 31596918 (+)

Expression


Co-expression Network