G787002


Basic Information

Item Value
gene id G787002
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 27376152 ~ 27377469 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU896308
CACAGACATGGTAAACCCAATCGGCGAATGTGTTGCTTTATACGTTATTACCAGCTGTCTGCAAATGACAGCTGAGTCGAGTCAATTTTAGCCATAATTTACCAGAGAACCAGTCAGACAAAATTATTCCGACACTTTTTTTATTACAAGTATCATTGATGACAGAATGCATGTCTCAACAACCTTTCGCCATGTACAGACGAAATGCAGAGCGGATACTTGAAACAGATGAAATTGAAGAAAGATGAGGGACTCGGTCCCAAAATAAAACCGAAGATCATTGCTCGTGTCCTCGCCCAAGCCAACTAAGTACCACCAAAGGGTCATTTTAACGTGCCCCTTATGCACACCGACACAAACATACACGTAAATCATTGCAACAAACAAGGTTTATTCTTATTTATTCAATCACATATTTATATTCTATTCATATTTAAATAATAAGTGCTGAGTCACAAAGCTTTTAACCTTTCTGTGGCCAACGTGGCTCAAAGCCCAGATGTAATAAGTATTTCATCACTCCTTGCCCATTCCCTGCATGCTAAAAAGACCACTGCACAAACTAGGGATGTGTCTGAAAACATTACTGGCTGTCAAATCCTTGCTTCCTCTCTCCTTGTTTCCTCAATTCCTATTGAAGTGCATTAGAGGAGAGGATTCAGGGTCCCTCCTCTGGCCCTGCAATGCCTTTGAGAGGAATTCATGAAACAAGGACGGAGAAAGCACAGGTTTGACTGGTAACAATTTGAGATCCAGCCCACCAATTAAGTTTAGGTTAggttagagaaagagagtggtAATTCAACACTCACGTCCCTCCTCTCCACGTAACTGGAGAAATGCTGCCATCTGGTTCTTTGAGCAAATCAATTAGTCCATGGGTTGTAAATTATTGTTATGTTAAGAGTGTAGTCATTTTCATGCGCTATAACAAGCGAGCGAAAGAGCGAGCACAGATGGAAAATGGACAATCCCTGAGTTGTGCTTTTCCTGGTGGGAGTGATATTTTAAAGATCACTGAAATAAGGGCAACCGAGGTGCTCATTTCATAGGTGGTCAACTTGGCAATTTATTTCCTGACGCTGTTGTAATATTATACTTTTTCTTTTATCACTTTGTTGCATAAACCTTGTAATAGGTGAGTTACTGAAATGGAAATCTTGCATTTGAAATCTTGTATAAATATGCTCTCTTATAAAACGCCCAAGCCATTCCAGGCAATCCCTCCACAATCATGCATGACTTCAGAATTGCCATGCAAAAGGAAATTTACGTGGCATCGTTAACTTTGATCAATGAAGTAGACAAAATGGCCGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU896308 True 1318 lncRNA 0.40 1 27376152 27377469

Neighbor

gene id symbol gene type direction distance location
LOC110531852 rtn3 coding upstream 230 27340698 ~ 27375922 (+)
LOC110531847 NA coding upstream 108660 27256603 ~ 27267492 (+)
epdl1 LOC106577537 coding upstream 155765 27214119 ~ 27220387 (+)
alpk1 alpk1 coding upstream 162965 27196521 ~ 27213187 (+)
LOC110531839 LOC106577540 coding upstream 1543865 25792766 ~ 25832287 (+)
LOC110531855 LOC106577526 coding downstream 11422 27388891 ~ 27399023 (+)
LOC110531857 LOC106577522 coding downstream 29832 27407301 ~ 27438764 (+)
LOC110531858 LOC106577523 coding downstream 61573 27439042 ~ 27471435 (+)
taf6l taf6l coding downstream 102569 27480038 ~ 27487523 (+)
kcnk7 LOC106577521 coding downstream 110179 27487648 ~ 27490438 (+)
G786999 NA non-coding upstream 39628 27336264 ~ 27336524 (+)
G786980 NA non-coding upstream 69215 27305897 ~ 27306937 (+)
G786968 LOC106577532 non-coding upstream 83906 27291890 ~ 27292246 (+)
G786966 NA non-coding upstream 92353 27278687 ~ 27283799 (+)
G786965 NA non-coding upstream 98166 27277778 ~ 27277986 (+)
G787027 NA non-coding downstream 7247 27384716 ~ 27384982 (+)
G787016 NA non-coding downstream 22314 27399783 ~ 27400279 (+)
G787013 NA non-coding downstream 22898 27400367 ~ 27401709 (+)
G787069 NA non-coding downstream 123910 27501379 ~ 27506375 (+)
G786496 LOC106577539 other upstream 962620 26413112 ~ 26413532 (+)
G786218 NA other upstream 1417285 25874527 ~ 25958867 (+)
G785962 LOC105020693 other upstream 1633243 25712997 ~ 25742909 (+)
G786091 NA other upstream 1829185 25545231 ~ 25546967 (+)
LOC110531825 LOC106577732 other upstream 1843875 25525371 ~ 25532692 (+)
G787022 LOC106577527 other downstream 1863 27379332 ~ 27379664 (+)
rbpjb LOC106577485 other downstream 1962512 29248127 ~ 29342203 (+)
LOC110531891 NA other downstream 2905206 30282637 ~ 30288163 (+)
G793757 LOC107579696 other downstream 4218527 31595996 ~ 31596918 (+)

Expression


Co-expression Network