G787027


Basic Information

Item Value
gene id G787027
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 27384716 ~ 27384982 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU896333
gctgttgattgtggcctgtggaatgttgtcccactcctcttcaatggctgtgcgaagttgctggatattggcgggaaatggaacatgctgtcgtacacattgatccagaggATCCcaaacatgtctggtgagtatgcagaccacggaagaactgggacattttcagcttccaggaattgtgcacaGACCCTTGCGattcgtgcattatcatgctgaaacatgaggtgatggtggcggatgaatggcacaacaatgggcctcaggatc

Function

NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU896333 True 267 lncRNA 0.50 1 27384716 27384982

Neighbor

gene id symbol gene type direction distance location
LOC110531852 rtn3 coding upstream 8794 27340698 ~ 27375922 (+)
LOC110531847 NA coding upstream 117224 27256603 ~ 27267492 (+)
epdl1 LOC106577537 coding upstream 164329 27214119 ~ 27220387 (+)
alpk1 alpk1 coding upstream 171529 27196521 ~ 27213187 (+)
LOC110531839 LOC106577540 coding upstream 1552429 25792766 ~ 25832287 (+)
LOC110531855 LOC106577526 coding downstream 3909 27388891 ~ 27399023 (+)
LOC110531857 LOC106577522 coding downstream 22319 27407301 ~ 27438764 (+)
LOC110531858 LOC106577523 coding downstream 54060 27439042 ~ 27471435 (+)
taf6l taf6l coding downstream 95056 27480038 ~ 27487523 (+)
kcnk7 LOC106577521 coding downstream 102666 27487648 ~ 27490438 (+)
G787002 NA non-coding upstream 7247 27376152 ~ 27377469 (+)
G786999 NA non-coding upstream 48192 27336264 ~ 27336524 (+)
G786980 NA non-coding upstream 77779 27305897 ~ 27306937 (+)
G786968 LOC106577532 non-coding upstream 92470 27291890 ~ 27292246 (+)
G786966 NA non-coding upstream 100917 27278687 ~ 27283799 (+)
G787016 NA non-coding downstream 14801 27399783 ~ 27400279 (+)
G787013 NA non-coding downstream 15385 27400367 ~ 27401709 (+)
G787069 NA non-coding downstream 116397 27501379 ~ 27506375 (+)
LOC110533009 NA non-coding downstream 192841 27575441 ~ 27578315 (+)
G787022 LOC106577527 other upstream 5052 27379332 ~ 27379664 (+)
G786496 LOC106577539 other upstream 971184 26413112 ~ 26413532 (+)
G786218 NA other upstream 1425849 25874527 ~ 25958867 (+)
G785962 LOC105020693 other upstream 1641807 25712997 ~ 25742909 (+)
G786091 NA other upstream 1837749 25545231 ~ 25546967 (+)
rbpjb LOC106577485 other downstream 1954999 29248127 ~ 29342203 (+)
LOC110531891 NA other downstream 2897693 30282637 ~ 30288163 (+)
G793757 LOC107579696 other downstream 4211014 31595996 ~ 31596918 (+)
LOC110531915 LOC106595846 other downstream 4368353 31753182 ~ 31757502 (+)

Expression


Co-expression Network