XLOC_002704 (gfra2b)


Basic Information

Item Value
gene id XLOC_002704
gene name gfra2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 19723025 ~ 19801821 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005025
ATGGGATCTATCATGATTCTCCTGAATATTCTGAGCGTCCTGTTTTTATCTGATGAGGTGGCACTTTCCATGGCAAGCCATTCAACCTTGTCAGGGTTGGGAACTCATGGATGGAGGGCCCCTATGGACTGCCTGAGGGCCAGTGAGGTGTGCAACCAAAACTCGCAGTGCAGCTCACGTTTTCGCATCATGCGCCAGTGCCTGGTAGGTCGTGACAGGACTACCATGCTGGCCAACAGGGAGTGTCAAGCTGCCCTCGAGGTTCTGCAGGACAGTCCACTGTATGACTGCCGGTGCAAGAGGGGCATGAAGAGGGAGCTTCAGTGTCTGCAGAGCTACTGGAGTATTCATATGGGTCTCAATGAAGGTGAAGAACTCTATGAGACCTCTCCATATGAACCGATGCATCTTTCTGATGAGTTCCGACTTGCCTCCATTATTTCTGCCATGGACTCTGCTTCTGCAAaaggaaatctgtgttttgaCACGGGCAAACcctgcaacccatgtctggatGCCACCAAGGCTTGCAACCTCAACGACACATGCAAGAAACAACGCACTGCACTCTTGGCCACTTGTAGTCCTGCGGCTCCCATTTCACAAGCTCACGAACCCTGCAACCGAAAGCGCTGCCACAGGGGTCTAAGGCAGTTCTTCGACCGTGTACAGACAGAATTCAGCTACCCACTGCTCTTCTGCTCCTGTCGGGATAAAGCATGTGCTGAACGCAGACGGCAAACCATCATGCCTGCGTGTTCGTATGAGGAAAAGTCAAAACCCAACTGCCTTGAACTAAGGAGGACCTGTCGTTCAGATCCGCTATGCAGATCCAGGCTGGCAGACTTTCACATGAATTGCCAGACGACACCGCATTCAATAACAAGCTGTCCTAATGATAACTACCACGGTTGTCTGGTGTCCTACGTTGGACTCATTGGTGagtgattatgggaaaaatctgCTGCATGGAAATAATAAGAATTTGAAATTGCATTTTAATGGACTGACTGTTTGGAACATGTATTTTGTCTTCTTTAGCTGCTTTAATTAGAAATGCATCAGGGATTTTACTTTTAAGAAAGATTAGAAAGGGCAGGGGAAAAGATGAAAGCAAGGggtattaaaatgttttgaagccaAGGATCCCCTAATATGATGCCTTTTCCCCCT
>TCONS_00005026
GAGATATCCAAGTTCTGGAATTGTAAGGTTTGAAGTGATTCTGACGTTTTCTTCAACCCGCATCTGACTGTTGGAAATGAACCTGAGGTGTGAAAAGGACGTTCGTTAAATAAGCGTTGGATTTGTCCGCGAACATTTACGGAATCCTGGATACCTCAACGGGGATTCGAATGGGATCTATCATGATTCTCCTGAATATTCTGAGCGTCCTGTTTTTATCTGATGAGGTGGCACTTTCCATGGCAAGCCATTCAACCTTGTCAGGGTTGGGAACTCATGGATGGAGGGCCCCTATGGACTGCCTGAGGGCCAGTGAGGTGTGCAACCAAAACTCGCAGTGCAGCTCACGTTTTCGCATCATGCGCCAGTGCCTGGTAGGTCGTGACAGGACTACCATGCTGGCCAACAGGGAGTGTCAAGCTGCCCTCGAGGTTCTGCAGGACAGTCCACTGTATGACTGCCGGTGCAAGAGGGGCATGAAGAGGGAGCTTCAGTGTCTGCAGAGCTACTGGAGTATTCATATGGGTC

Function

symbol description
gfra2b Predicted to enable signaling receptor activity. Predicted to be involved in nervous system development. Predicted to be located in plasma membrane. Predicted to be part of receptor complex. Predicted to be active in external side of plasma membrane. Orthologous to human GFRA2 (GDNF family receptor alpha 2).

GO:

id name namespace
GO:0007399 nervous system development biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0043235 receptor complex cellular_component
GO:0038023 signaling receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091204-26 Predicted to enable signaling receptor activity. Predicted to be involved in nervous system development. Predicted to be located in plasma membrane. Predicted to be part of receptor complex. Predicted to be active in external side of plasma membrane. Orthologous to human GFRA2 (GDNF family receptor alpha 2).

Ensembl:

ensembl_id ENSDARG00000044015

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005025 False 1173 mRNA 0.48 5 19723025 19801651
TCONS_00005026 True 528 mRNA 0.50 2 19798476 19801821

Neighbor

gene id symbol gene type direction distance location
XLOC_002702 si:ch211-127i16.2 coding downstream 199273 19427474 ~ 19523752 (-)
XLOC_002703 NA coding downstream 201321 19518885 ~ 19521704 (-)
XLOC_002701 NA coding downstream 630419 19088996 ~ 19092606 (-)
XLOC_002700 adra1ab coding downstream 711091 18999841 ~ 19011934 (-)
XLOC_002699 LRRTM4 coding downstream 1230408 18291971 ~ 18492617 (-)
XLOC_002705 NA coding upstream 129477 19931298 ~ 19996731 (-)
XLOC_002706 NA coding upstream 232079 20033900 ~ 20065149 (-)
XLOC_002707 pbdc1 coding upstream 301246 20103067 ~ 20106012 (-)
XLOC_002708 CR450836.1 coding upstream 341976 20143797 ~ 20151328 (-)
XLOC_002709 htr7b coding upstream 357017 20158838 ~ 20175118 (-)
XLOC_002698 NA non-coding downstream 1436082 18284414 ~ 18286943 (-)
XLOC_002697 NA non-coding downstream 1440069 18274014 ~ 18282956 (-)
XLOC_002695 NA non-coding downstream 1811486 17900311 ~ 17911539 (-)
XLOC_002710 NA non-coding upstream 432193 20234014 ~ 20236971 (-)
XLOC_002714 NA non-coding upstream 646818 20448639 ~ 20456007 (-)
XLOC_002716 BX294119.1 non-coding upstream 681993 20483814 ~ 20483930 (-)

Expression


Co-expression Network