G787013


Basic Information

Item Value
gene id G787013
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 27400367 ~ 27401709 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU896319
gagtaggcgtaTCCAAGCTTTTgacattttataatttcattttaTATTTTTTCACAATTTCTATCAGTTTTGTTATTCAGATCCAAGGGATGTCCTTGCATGGGGTTATTTTAAATATTCCGTAAAAAGTTGATTTTTTTTCGGTCCCACTTTAAAACGGAGAGCAACTTATAAAGCAGGGTCCTCCAACTGGCGTCACGCCAGTTTGGTTTTATTTGCCCCCCCCAAGTTCTCTGAGCCAAAAAATAAGACTgtaaacaccagcaaatcagctctgAGATTTAAATTTTGGAGATCTGTTCCAAACTATTTCCAAGCAGAAGAGAGATGCGATCGCATACAAATGCGAACAAGGTTCAAGTCATCTGTAAGCGTATGTGATACTCTATGAATGGTGTACAAACAGTGCATGTCGTCACATTTGGCAATTTACCCTACAGTGGGAATTGTCACCCTTTGGAGAGTATGACATACGCTTATTGAtgatttgtgaagcatttatttagtgCTTATGAAGCCTTTGTGCATGCTATACAGGTTGCACTTTGTTCAAAGTGGGACCGATTTTTCTAGATATTAATGCACCATACTTTACAACACTGAATCttcaaaatacttttttttaaaactgttttcGTATAACGTTTTTCTGAAATGTAAAAGAATTCTTCCTTTAAGAACATTTAAGTTTTTGTAATGGTGATTTGACACATGTATGCCTGCACTGTAAATACAACATTTATGTTTAAAGGGGTGGTTAAATGTCAATACCCTTAATGTATTATTTGATTTCCTATGAAaataaacctaaccctttatGGTTAGTGGTACTCATACTGCTTCTGATTTTGTTAATATTTCCTTGTCTCTATACATACTGTGTACATTTAACTCTTTCAATGTATTTATTTGGTCTGAACAATCAGTCAATGACACATGACTATTTCATTCGTATTTAATATCTTTGATTAAACGATCAACAAATGAgcttttttttttcccccccagtcAAAATTACAATCCAATGGCCTGCTGCTTGGATGTGGAGTGTTGGACATATATATACGTATAGGAAGTATCAGAAATCATGTGGAAGAGATTTTCATTTGCAGTGTTTTTGGTTCACCAATATGCTGAAAATAATGTCCAAGAGCACAGTCTGAAAATGCATTGAAAACAGAAAgtactgttttatttttttcttgtaCAGCTGTGACGAACTTTAAAATGTACAGGGGACACTGACCGTGCTGTACTATTTACCTGTTGAGAATGTACCACTTTCAATTGGTTCCTACCTTGTTTGTTCAAATGCCATTTTTTTTTTAGGTACTAATAAACCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU896319 True 1343 lncRNA 0.35 1 27400367 27401709

Neighbor

gene id symbol gene type direction distance location
LOC110531855 LOC106577526 coding upstream 1344 27388891 ~ 27399023 (+)
LOC110531852 rtn3 coding upstream 24445 27340698 ~ 27375922 (+)
LOC110531847 NA coding upstream 132875 27256603 ~ 27267492 (+)
epdl1 LOC106577537 coding upstream 179980 27214119 ~ 27220387 (+)
alpk1 alpk1 coding upstream 187180 27196521 ~ 27213187 (+)
LOC110531857 LOC106577522 coding downstream 5592 27407301 ~ 27438764 (+)
LOC110531858 LOC106577523 coding downstream 37333 27439042 ~ 27471435 (+)
taf6l taf6l coding downstream 78329 27480038 ~ 27487523 (+)
kcnk7 LOC106577521 coding downstream 85939 27487648 ~ 27490438 (+)
LOC110531861 LOC106608584 coding downstream 92756 27494465 ~ 27561525 (+)
G787016 NA non-coding upstream 88 27399783 ~ 27400279 (+)
G787027 NA non-coding upstream 15385 27384716 ~ 27384982 (+)
G787002 NA non-coding upstream 22898 27376152 ~ 27377469 (+)
G786999 NA non-coding upstream 63843 27336264 ~ 27336524 (+)
G787069 NA non-coding downstream 99670 27501379 ~ 27506375 (+)
LOC110533009 NA non-coding downstream 176114 27575441 ~ 27578315 (+)
G787107 NA non-coding downstream 182754 27584463 ~ 27584768 (+)
G787118 NA non-coding downstream 219268 27620977 ~ 27623770 (+)
G788583 NA non-coding downstream 302306 27704015 ~ 27704232 (+)
G787022 LOC106577527 other upstream 20703 27379332 ~ 27379664 (+)
G786496 LOC106577539 other upstream 986835 26413112 ~ 26413532 (+)
G786218 NA other upstream 1441500 25874527 ~ 25958867 (+)
G785962 LOC105020693 other upstream 1657458 25712997 ~ 25742909 (+)
G786091 NA other upstream 1853400 25545231 ~ 25546967 (+)
rbpjb LOC106577485 other downstream 1938272 29248127 ~ 29342203 (+)
LOC110531891 NA other downstream 2880966 30282637 ~ 30288163 (+)
G793757 LOC107579696 other downstream 4194287 31595996 ~ 31596918 (+)
LOC110531915 LOC106595846 other downstream 4351626 31753182 ~ 31757502 (+)

Expression


Co-expression Network