G788408 (LOC106577523)


Basic Information

Item Value
gene id G788408
gene name LOC106577523
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 27463292 ~ 27468322 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU897812
TAAATTAGAATGCTCAATTGCTGCTTGCTACTAGATACAGAAAGTACTCTGTACAAAAGGACAGTACCTGGTGTCTTTCGTGGCCACAAACACCACGGGGTTGGGTGCGTCTCCCTGGTTCACTTTCTGACGCTTGATCACCGACTGTGAAGTGGTCCTCATGCCCGATGCGAACGGCCTCCCATTGGTGGGGAACGGCAGCCCTGCCGCCTGTGAGCTACTGTCAAAGGGCCTCTTCCCGAGCAGGCCTGATCCCCCGCGGGGCTGGTTGGCCTGGTTGCGGTTGATGGGTGTGGGAGCGCCTCTGGGGGCCTTCAGCTTGAGTGGAGCCTGGATGGCCAGTTCCTTCACTATAGTGGCCAGCGGTGGTCGAGGGATAGAGCGGTTCTTTATAGGGGCCTTGGTTGCTTTAGGCAACCTTATCATACACTCGGCCTTGACGGCGTTTGCATTGATGGAGGCGTAGGGGCGGCGTGCCGCGCGGCGGGGCTGCAGGATGTCAGTGCAGACACGGCGGGCAATACGCGTCAGCTTGGTGGTCTGCAGGATGAATGTCTGCCGGTTCTTGGCCAGCAGCTTGGCGCGCCCCCCGCTTGTCGTGAACGGGGACAGGCCTTGCACCTCCTGGCGGGTCATGTGACCGCGC

Function

NR:

description
metastasis-associated protein MTA2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU897812 True 646 TUCP 0.60 4 27463292 27468322

Neighbor

gene id symbol gene type direction distance location
ecsit ecsit coding downstream 56607 27401836 ~ 27406685 (-)
LOC110531854 LOC106577527 coding downstream 81807 27376312 ~ 27381485 (-)
LOC110531851 LOC106577528 coding downstream 127212 27327518 ~ 27336080 (-)
LOC110531850 LOC106577529 coding downstream 135886 27305847 ~ 27327406 (-)
LOC110531849 LOC106577530 coding downstream 157892 27296476 ~ 27305400 (-)
trnaa-ugc-33 NA coding upstream 16046 27484368 ~ 27484441 (-)
LOC110531864 LOC106577516 coding upstream 132723 27601045 ~ 27623830 (-)
LOC100136672 sstr1b coding upstream 353252 27821574 ~ 27834414 (-)
chi chi coding upstream 399026 27867348 ~ 27872371 (-)
LOC110531868 LOC106577509 coding upstream 425714 27894036 ~ 27896838 (-)
G788405 NA non-coding downstream 63082 27399307 ~ 27400210 (-)
G788407 NA non-coding downstream 64401 27398409 ~ 27398891 (-)
G788389 NA non-coding downstream 76471 27386370 ~ 27386821 (-)
G788366 NA non-coding downstream 187402 27275580 ~ 27275890 (-)
G788397 NA non-coding upstream 91215 27559537 ~ 27561517 (-)
G788500 NA non-coding upstream 101152 27569474 ~ 27569785 (-)
G788508 NA non-coding upstream 113018 27581340 ~ 27581664 (-)
G788511 NA non-coding upstream 118218 27586540 ~ 27586804 (-)
G788515 NA non-coding upstream 136618 27604940 ~ 27624431 (-)
G788173 NA other downstream 526528 26936484 ~ 26936764 (-)
G788172 NA other downstream 527786 26935127 ~ 26935506 (-)
G788171 NA other downstream 529891 26933041 ~ 26933401 (-)
G788162 NA other downstream 540890 26921912 ~ 26922402 (-)
G788495 NA other upstream 94840 27563162 ~ 27563525 (-)
G789228 LOC106577504 other upstream 676898 28145220 ~ 28146979 (-)
G789863 LOC100194703 other upstream 1060498 28528820 ~ 28652471 (-)
G789945 NA other upstream 1195129 28663451 ~ 28666058 (-)

Expression


Co-expression Network