XLOC_027045 (ccdc167)


Basic Information

Item Value
gene id XLOC_027045
gene name ccdc167
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 5255041 ~ 5273838 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053313
GCCGGCAGATGGCAGTATGATTGTCATTATTGACTGAGGCAGGAGAGCGAGTGAAGGAATCGTGTACGGAAGTATTTCCCaacatttcttttctttaattaaaCCCTCAAGCTTTCCAAAATGACCAGAACAAGGACcgtaaagaaagagaaaataagtgTGGCGAGTGAGaTTGACCGCGTAGAAGAGCGTAAATTGCAGTGTAAAAACAGCCTGGAGCGGGCAGAGTTCAGAAAGAGGAAACAGCAGCTCTCAGACGACGACAGGCTGGCTCTGGAAGATGAGATGACCATACTGAATGAACGAGTAGAGAAATACGaaAAGGATCTGCAGGTGCTGAGAGGAGAAAACCGGAGGAACATGATGCTGTCCGTCGCTCTGCTAGCCATCAGCGCTCTTTTCTACTACACATTTATATATTGAAGAGGTATTGTCTGTCATGTCAAACACAAAGTATGAGGAAACCAATATCCCCCTCTGGGTCCACTCATTATTCTGCTGTGGGAAACATTTGTTTATGCACAGATTTATGAATCTGTCATTTAAATCATGAATGCATTATGCCATCATCATCATGGCATGTTGGATTGTCTGAACACGGCTTTCTGTCTGTGGTCTATAGCAGAGATCTTGGTGCTTGCTTGGTGATCGAGGAAAGACACAGATTGGGGGTTTTATTTATGCGTATATGCTGGTCAAAgatgcattaaattaaataataaaagacatGTTACATAC
>TCONS_00053314
GGCAGGAGAGCGAGTGAAGGAATCGTGTACGGAAGTATTTCCCaacatttcttttctttaattaaaCCCTCAAGCTTTCCAAAATGACCAGAACAAGGACcgtaaagaaagagaaaataagtgTGGCGAGTGAGaTTGACCGCGTAGAAGAGCGTAAATTGCAGTGTAAAAACAGCCTGGAGCGGGCAGAGTTCAGAAAGAGGAAACAGCAGCTCTCAGACGACGACAGGCTGGCTCTGGAAGATGAGATGACCATACTGAATGAACGAGTAGAGAAATACGaaAAGGATCTGCAGGTGCTGAGAGGAGAAAACCGGAGGAACATGATGCTGTCCGTCGCTCTGCTAGCCATCAGCGCTCTTTTCTACTACACATTTATATATTGAAGAGGGGCTCCTGCTGGAAACTGTGGCCTCACTGGTTGTTGAGCAGCCATCATCGGAGAGCCAGGCATCATGGGAGCAGCTCCTCCTGCAGGCTGTGGGTCACAGAGAGACACACGACTTACTATTGAGGAGgcattcaacaagaagaggcaatacacacaacaagTATTACACTTCAaaggaactgtttgtgctcagagaattaagtgctaagGTGCACTTAAAAGTTGGACTTTGATGGTTA

Function

symbol description
ccdc167 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human CCDC167 (coiled-coil domain containing 167).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-041210-79 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human CCDC167 (coiled-coil domain containing 167).

Ensembl:

ensembl_id ENSDARG00000045850

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053313 False 738 mRNA 0.43 4 5255041 5256856
TCONS_00053314 True 630 nonsense_mediated_decay 0.47 7 5255078 5273838

Neighbor

gene id symbol gene type direction distance location
XLOC_027044 si:ch211-214j24.14 coding upstream 1068 5249494 ~ 5253973 (+)
XLOC_027043 galnt8b.2 coding upstream 31871 5215950 ~ 5223170 (+)
XLOC_027042 galnt8b.1 coding upstream 41616 5205265 ~ 5213425 (+)
XLOC_027041 rad51ap1 coding upstream 51698 5196469 ~ 5203343 (+)
XLOC_027040 fgf23 coding upstream 60014 5193198 ~ 5195027 (+)
XLOC_027046 NA coding downstream 29111 5302949 ~ 5304672 (+)
XLOC_027047 si:ch211-214j24.10 coding downstream 43645 5317483 ~ 5325336 (+)
XLOC_027048 apex1 coding downstream 60150 5333988 ~ 5340530 (+)
XLOC_027049 zgc:113263 coding downstream 67754 5341592 ~ 5368158 (+)
XLOC_027050 selenoo2 coding downstream 104500 5378338 ~ 5387478 (+)
XLOC_027036 NA non-coding upstream 288491 4963839 ~ 4966550 (+)
XLOC_027035 NA non-coding upstream 292419 4938766 ~ 4962622 (+)
XLOC_027034 NA non-coding upstream 328980 4832804 ~ 4926061 (+)
XLOC_027032 NA non-coding upstream 539880 4711163 ~ 4715161 (+)
XLOC_027031 CABZ01020834.1 non-coding upstream 564200 4690726 ~ 4690841 (+)
XLOC_027052 BX324164.1 non-coding downstream 147068 5420906 ~ 5456058 (+)
XLOC_027053 NA non-coding downstream 151022 5424860 ~ 5456948 (+)
XLOC_027054 NA non-coding downstream 171931 5445769 ~ 5447230 (+)
XLOC_027063 CU571169.1 non-coding downstream 551530 5825368 ~ 5826340 (+)

Expression


Co-expression Network