G788762


Basic Information

Item Value
gene id G788762
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 28178098 ~ 28184335 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU898188
AAAAGCAGAATGGATGCCTGGATAAACACATGCTTACCTGATGAATTCTtacaaacaaaagaaaaacagggATAGCAGTACATATTGATGCAAAATCAGTAGGACAGAAATACATACCAACACGTCAGTGCTGTGAGAATAACACATTCCCTTTCACTTAGACTGTGCACAGCCAACACCGAGCTACTTGCCTAATACAGGTGTGTGCTCCTACCTTTCACGTCCTCATCCTCCATGGTGGTGTTTGCACTCTCACTGGACTCCTGTTGGACAAGAACAAACAGCTGAGAACAATGAACACCTGTCGGCCGTTGAAACTGGATAAAGCGGGAGCACAAGAGAAGTAACGCTTTGTCAGATGAGTAAAATAGTTTGGGCAAAGGAAACTGATTATCTTCGGGAACCGCTGAGAGAACAGATTTGGATAACTAAACATACTCTTTTGGGCTATAGTCACACAAACAAAAATATCATCATTGACATTGTGACAGAACAGATTTGAACAGAGGTCGACGTCTCACTTTGGTCACACAAGCTGTAGGGCCTAGTTTTGAACTATGTCATTTTAACAGCAAGCCACTAGCAGTACTACTCCAACAACACTCAGATAGTGAAAAAACCGAATGCACATCTTCACGCACAAAGCGTGAAAACAACAACATATCTAAAGGAGACATATCCCTGGATCCACATTCGTCAAACCGAATCGCATTCTAGCTCGTCGGGGaacggactctacaaggtgtcgaatgcgtttcacagggatgctggcccatgttgactccaatgcttcctatagttgtatcaagttggctggatgtcctttgggtggtggaccatacagggaactgttgagcgtggaaaaacccgGCAGCgtagcagttcttgacacaaacctttGCGCCTGGCACCCTtttaccataccctgttcaaaaggcacttaaatgttttgCCTTGGCCAtgcaccctctgaatggcacacatacacaatctatgtcttaaggcttaaaaatccttcttacggtgttcttaatgtttttataTACTCTGTGTATAAATACAGCATGCACATTTGTTTAACCTGAGATCAAACATGTTGACAAAGTCCTAAGTCCGGTGTCTGTGTGAAGCGCAAATGAAACAAACATTTAGGACATACACACCAAGGCGCCATGCATGCAACGTTATACAAGGCTTTGTAAGAAAACCAAACTAGCTTATCACTCTGCTAACTAGAGGACAACATCAAACACCTAAATGTTTGGTACTACTGTTCCATTTACTCACTACTTTGTTTCCATCAGTTGGGTTGTGGATGACAGTGGTTTGAGGCTCCTGGttcacagagaggaggaggaagagggtgaaGAAGGGGTTAAATAGACAGGAAATTGGCGTGGTAAATAGTTAATaagaaggagagaaaaaaagggCCAAAGGAACCTCGGAGAAGGCAAGTTTTGGGGGTAAAAATCAAGGACAAACGATGCACCACTGAGGCTATAGCTAAGGGCTTTAATGCAGCACACCCAACTTTTTCCATGAAAACGAGAGATCTTTGAGTCGTCAACTTGGTGCAATATAAAAGGCATCAGAAGACAAGGCTATGATATTCATATTTAAAACAGACACACAGCAACCAAGACAGGATGGGAGGTGTACAGCAGTAGGAAGCATGCTAGTCACCAGGCCCTTCCTGGATATAAACTACAGGAAGGTATTTTACGTGTGTACAGCCAAAGCAAGGCGTGCAGTTGACCCTTAAGAGCTGActccagacagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgagaacaTCAACATGCCACATTTCTAACACCTAGAAATACATAACCCCATCACTTTAGAAGTAGTGTAATAGCCATTGTTAAAAAGCCACGAGgttattaccatgttattgtatACATAATGGGATGGAAAAACGAAGCTAATATTTTGTATGCATTTACAAATGGTGACATTATACTAGGGATGCGTCTCCGGTTCTGCCCGGGGCTGGTTAAATACAGTACAGGCCTCTTGGCTGACCTGACATGTCTAACACGCGTAGATAAAACTGCTGTAAGTCTGGGTCGATTCCCTCTGGGCAGTGCCGACAGGTGGGCTGTCATAAGGCATGCCATGGCACGGTCACGTTGAAGCTCATGTGTGGTGACAGGGTGACACGGATGGCACTAGCGGAGTAATCTTAGGATGCGTTTCACTGCTAGTGTGCAAGGTCTATTTTGGGAAGCACGCATGCGTGTTTTAACCAGCATGTCTCATTGGTTTCCTTGgtaacttgggggggggggggggggggcttaagtGGAGTGAAAGTAAAAACACAAACCCCGGGATGTACAAAAAAAGGCATCACTGGGAACAAAACAAAGACAGACGTTGTTAGAGTGAGGCGAGCAGCCCGAGCATggaggatgagacagacagacaggcaggcagacgtgcagaaagacagacagtgtACCAGAGTGGGGGGCTCTTTGGGGCTGGTGACTACattggtcttgttgttgttgatctaaAAAGGTAAGTGGACAGAGACGGAGACAAGAAACAGCGATTGATATCAGGAACAAAGGACCCAGTGGTccaagcagggagagagacaggagaggtgtCCCGGAATACACAGCTGCGGGAGTGAAAATGTTAGGAGTTAACGAGAAAATAATCTGCAGGGtataaagagtgagagaaagtaaGTTCACGAGACAAATCTGTGGGTTCCAAGCCTGTAGCTGGTCATCCTTATTCTGGAGGATTATAAGCAGAATAAACATGCAAAGGAGTTCCTTGCTGAAACAGAACTTCATAAACATGAACTTGAAAGCGATCGGCTGTTCCGCTCTACTATTTTTCATGTTTTTCAGGAAGCCTAAATTGCCACTATTAAACGTCGTTTATGGAGACCTTAAATCTAACGAAGTAGCGCCATTGTGGCTCTAAACTAGAGATGAGAAATACAAATTCAGTAGTCATGGAATTATCCAATGCTGTTGAAATTTAAAGTAAAACGACGTTGTGACATCCCAATAGTTTTTGGGTTTTTACTGTTAGCAGGAACATCATCGTCTGCATCGGAAGCACGTCAGGGGACAAAATTAAGGTCAAAAAGTGTTATGCTATTCCTTTGTGAACTGCATGTCCTGATTTTGTAGCCCGGTCATTGGGCATCCCAgctatgtaaaacatttttttttaagtactagGTAATATGGGTCAACTGGAATGCACCTGATCATCGAACTAGGTTCTCCTCAGGGAGATATAGGGAGCTAGCCATGAAACTCAAACTACACATCAAGAGGCTTATACAATGGGTTGCTCATTAAACCAATACGAGACAACTATCCTTGGCCAGGGATCTACAAATGGCCGATTGAACCACCCAGAAACTAACCACTAGACAGCACTAGGGTGTTCTATAATCAACCACATAACTGGCAAGCCGTGGTAGATGCAAGGTTGGACAAAAAATAGGGACAGGAATACCAGCAATATTGGCATTGGCTCAGTCTCAGACAGAACACAAAAGAGAACAAGACAAACGGGGTCCAATATCACAACCCCAAAACACAACCAAGACTCAAGACCCTAGACTTAACAGTACACTCTTTGAGAAAGGCTATTTTATAACaaacacatttacatttgagtcatttagcagacactcttatccagagcgacttacaggagcaattagggttaagtgtcttgatCAAGGGcaccgacagatttttcacctagtccgGAAtaaaaccagcgacctttcggttactggcccaacgctctcaaccgctaggctacctgccgcacacATTTGTAATCATTAAAGATTTAGCATACACAGAAACCAAAATTGATGGCAGGACTAAATAATGTAATGCCTGCCATTTCCCCAGTCCATTAGGTTATCTACTCTTCAACACAGCCTCAGAGGCAGTGACATTTAAGAGGGTAACATGCTGGACCCCTGCGCTAAACCTGAAATAATCCTTCAAAAGCTGCCTGCTGTGCTTTCAAAACACACCGATGACTCACACGGCTGCAGATAGACTGATTTAGAAAGAGTTTTTGGGCAAATATATCAGGTACAAATGTACCTAGATGCTAAACCTCCTACAGCTGCTTAAACCGCCTGCCATAAGCACCTTGGGGTAACGGTGTTATCAAATATATTGGTTTATCCATCACCCCTCCTCGGAGGACAAAAATAACTTGGtatgtacatttacatttacatattTGGCACAGCAGTTACATGTAATGTATCTCAAAAGACCAATATGTAACTACTGTGTCAAAAAAAAGAAAGTTCCATGTatgtaaaaaaatgtgtttagAATATACATAAGTTATTTTTGTCCTCCGTACTTCTGTTTTAACCTAGAGAGGTTAGAGAAGCTATCTAGATCCTCAACGAGACTGTGCAGGGGATCCATATTACGAATTCAAGACAagttgagtcatcggcatacattgACACCTTTGcttttaagccctggatttctagTCCCTTGagattgttggatctgattttaatagctaacatttcgatggtcCTAAAAaaaaatggctgtgcagcgacgttccccatccaacctgacagagcttgaggggatctgcaaagaagaatgggagaaactccccaaatacatgtgtgctgagtaaagggtttgaatacttatgaaaatgtgaTATTAGTTGTTttattcgggggggggggggggggggatacatttgcaaaatgttcttaaaacaagttttactttgtcattatgagttattgtgtgtagaatgatgaggggaaaacacaattttagaataaggctgtaatgtaacaatcaattacatttatgacaagtggactccaatcaaattttaGAAACATCAAGTATAACTAATGGAAACCTgcgctcaatttcgagtctcagcaACTGGTCcgaattatgtaaataaggtatgttttaaaaaaaaaaaaaagttgcaaaaaaattctaacaacctgttttcgctttgtcattatgggatattgtgtgtagaatgatgaggagAGTAAGTGgatacctgctcgttgaacatctcatttcaaaatcatggtcattaatataaagttggtcccccctttgctgctttctgggaaagctttccactagatgttggaacatttctgtggggaggttgggcactgatcttgggcgattaggcctggctcacagtcgacattccaattcatcccaaaggtgttcaatggggttgaggtcagggctctgtgcaggccagtcaagttcttccacactgatcttgacaaaccatttctgtatggaccttgctttgtgcacaggggcattgtcatgcggaaacaggaaagggccttccccaaactgttgccacaaaattggaagcacagaatggtctagaatgtcattgtatgctgtagcgttaaaatgtctcttcactggaactgaggggcctagcccgaaccatgaaaaacagccccagagcattattcctcctccaccaaactttacagttggcactatgcattcgggcaggtagcattctcctggcatccaacAAACCAAGATTTGTCTGTCAGACTGtcagatggtaaagcgtgattcatcactccattcATTACtgaccttaggcttgtgtgcggctgcccggccatggaaacccatttcatgaagctcccgatcaacagttattgtgctgatgttgcttccagaggcagtttggaacttggtaatgagtgttgcaaccgaggacagatgattgtaatgagctacgcgcttcagcactcggcggtcccgttctcggagcttgtgtggccaaccactttgcggccgagccgttgttgctcctagatgtttccacttcacaataacattacagctgaccagggcagctctagttgggcagacatttgacaaactgacttgttggaaaggtggcatcctgtgaacggtgccacattgaaattcactgagctcttcagtaaaccaaacagtagaatggcctatgtcagcaacgggtgtagctgaaatagccaaatccactcatttgaaggggtgtccacctactgttgtatatatagtgtatgtcaaGTGCAGCTCCTGGGTATGTGATCCTAGTATTTTAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU898188 True 6202 lncRNA 0.44 2 28178098 28184335

Neighbor

gene id symbol gene type direction distance location
ank2b LOC103361685 coding upstream 17844 27995879 ~ 28163412 (+)
LOC110531867 LOC106577513 coding upstream 405375 27768636 ~ 27772723 (+)
trnaa-ugc-34 NA coding upstream 519542 27658481 ~ 27658556 (+)
LOC110531865 LOC106577518 coding upstream 530733 27633636 ~ 27647365 (+)
LOC110531863 LOC100695098 coding upstream 578501 27588954 ~ 27599597 (+)
LOC110531872 LOC106577502 coding downstream 147471 28331806 ~ 28340457 (+)
LOC110531876 LOC106577496 coding downstream 263927 28448262 ~ 28548376 (+)
LOC118966204 NA coding downstream 312882 28497217 ~ 28497272 (+)
LOC110531878 LOC106577495 coding downstream 369434 28553769 ~ 28663634 (+)
LOC118966022 NA coding downstream 708713 28893048 ~ 28894058 (+)
G788773 NA non-coding upstream 21 28176926 ~ 28178077 (+)
G788753 NA non-coding upstream 310319 27819854 ~ 27867779 (+)
G788771 NA non-coding upstream 346189 27831454 ~ 27831909 (+)
G788701 NA non-coding upstream 378361 27799196 ~ 27799737 (+)
G788992 NA non-coding downstream 100916 28285251 ~ 28285462 (+)
G789292 NA non-coding downstream 109389 28293724 ~ 28294024 (+)
G789289 NA non-coding downstream 110093 28294428 ~ 28295041 (+)
G789310 NA non-coding downstream 145337 28329672 ~ 28329875 (+)
G789311 NA non-coding downstream 145684 28330019 ~ 28330314 (+)
taf6l taf6l other upstream 690575 27480038 ~ 27487523 (+)
G787022 LOC106577527 other upstream 798434 27379332 ~ 27379664 (+)
G786496 LOC106577539 other upstream 1764566 26413112 ~ 26413532 (+)
G786218 NA other upstream 2219231 25874527 ~ 25958867 (+)
G785962 LOC105020693 other upstream 2435189 25712997 ~ 25742909 (+)
rbpjb LOC106577485 other downstream 1155646 29248127 ~ 29342203 (+)
LOC110531891 NA other downstream 2098340 30282637 ~ 30288163 (+)
G793757 LOC107579696 other downstream 3411661 31595996 ~ 31596918 (+)
LOC110531915 LOC106595846 other downstream 3569000 31753182 ~ 31757502 (+)
zgc:112271 bola2 other downstream 3938347 32122682 ~ 32124851 (+)

Expression


Co-expression Network