XLOC_027046


Basic Information

Item Value
gene id XLOC_027046
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 5302949 ~ 5304672 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057569
CTGCATTCTGCTCCCTGAACGCAAAGTTCTAGAAAAGCTGCGTTCACATTTCAACCCCTTTCCTGACTTTCTGCTGACGCTGTTTCTTCAGAGGGTCGACTAGGGTCATGTGTCTCCTTATTTCTGTCCTTCAGCTCCTGAAATATCCTGCTACAGTGCTCGACGCTTTGCTTCAGCTCCCACAAGTCTCTCTGGACTCCGTCTAGGATGTCAAGTTTCGACAGTTTTCTGTCTATCGAAGCCAAATGACTCTGTTCACTCTCAGTGACTCCCAAACTTTCACTGCAGATTCTTGGATTCATAGTGCTGCATTGATTCTCCTGCCACACCATCTCAAAAAACGAGTCTATAAATGCCTCAAGCTCCTCTATGTTGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057569 True 376 lncRNA 0.47 2 5302949 5304672

Neighbor

gene id symbol gene type direction distance location
XLOC_027045 ccdc167 coding upstream 29111 5255041 ~ 5273838 (+)
XLOC_027044 si:ch211-214j24.14 coding upstream 48976 5249494 ~ 5253973 (+)
XLOC_027043 galnt8b.2 coding upstream 79779 5215950 ~ 5223170 (+)
XLOC_027042 galnt8b.1 coding upstream 89524 5205265 ~ 5213425 (+)
XLOC_027041 rad51ap1 coding upstream 99606 5196469 ~ 5203343 (+)
XLOC_027047 si:ch211-214j24.10 coding downstream 12811 5317483 ~ 5325336 (+)
XLOC_027048 apex1 coding downstream 29316 5333988 ~ 5340530 (+)
XLOC_027049 zgc:113263 coding downstream 36920 5341592 ~ 5368158 (+)
XLOC_027050 selenoo2 coding downstream 73666 5378338 ~ 5387478 (+)
XLOC_027051 si:dkey-14d8.20 coding downstream 87422 5392094 ~ 5494298 (+)
XLOC_027036 NA non-coding upstream 336399 4963839 ~ 4966550 (+)
XLOC_027035 NA non-coding upstream 340327 4938766 ~ 4962622 (+)
XLOC_027034 NA non-coding upstream 376888 4832804 ~ 4926061 (+)
XLOC_027032 NA non-coding upstream 587788 4711163 ~ 4715161 (+)
XLOC_027031 CABZ01020834.1 non-coding upstream 612108 4690726 ~ 4690841 (+)
XLOC_027052 BX324164.1 non-coding downstream 116234 5420906 ~ 5456058 (+)
XLOC_027053 NA non-coding downstream 120188 5424860 ~ 5456948 (+)
XLOC_027054 NA non-coding downstream 141097 5445769 ~ 5447230 (+)
XLOC_027063 CU571169.1 non-coding downstream 520696 5825368 ~ 5826340 (+)
XLOC_027069 NA non-coding downstream 652731 5957403 ~ 5963871 (+)

Expression


Co-expression Network