G789323


Basic Information

Item Value
gene id G789323
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 28353967 ~ 28358180 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU898803
AGGatgtaaaaacacacacatctaTGTCAACACTTGTATGCACAGttgcgtatacacacacacacacactacaattaaCACACACGCACGTCGGTATGCacgtatgcgcacacacacacacacccaccaaccTTGTATTTCATCTGGAAGTTCTGGACCAGGTTGAGGTCTACAAACATGCGTATGGTGGCCTGAGTGGTCTCAGCGTCGGACAGCTCAAAGTCACTGAAGCTAAACTCCATCAGGCGCAGAGACTGGGCTGACGGAACAGTGGCTGCCTGCAGCGCCCGTGTCtcttcctctgcagcagaggcgtGATACGAGAGGACCTGAgaatgacacacacaaacacacagcgacTGTTCTCCTTAAAAGTCAACACGATCGCTCTGACCGAGTATACAACTAAAAAACAGATTTCACATTTTGGTAGCTGACACTTTCACAGATTTCCTCCCCCacacacatcCTTCAACCCCAAGTCCATCCATATCAGAGGCCTGTCATTGATAATTGGGGGAGAAAAACTGAGAAAGCTAGAAGAGGTCAGTCCTCGCGACGGCTACAGCGCCGCTGGAGAATGGGCTGAAGTGGTGGCTGCTGGGTAACGGCGGGGAGAGTGTCAGCTGCAGCCGAGAGGGGACGTCACCGGGGAGCCCTGACAGTGACAGCTCCAGAATAGAACAgtcagggagagaacaggagagggggaggaccggaggagaggagggggatacaTACGTCATCGAGGGCTGAAGAGGTCTAGGATAGAGTTGGAGTGATCACGCTAGTTCTGTTTTAACGCAGGGGAAGACGGAGCAGAGTGTGGAGAAGACTAGCCAGTCTTTCCTAATGGCAACCATCGCTGTTACTCTCGATCCCCCATGTTTAAGGTCTCCATATTGTAGTTGCCTGCAGAGGCACTGAGCTAGCATTATCTTACAGTACCTTCCCTCAATATTATCATGAACCATTAGGATGTAAAACTCCAAACTGACCTGAGACCTGTGTCTCTTACCTCCAATGTGACCTCCTGTTTGGCCATGGctctctccactgtttcataCATCTGGGTGTTCTGTATACCCAGTCCACAGAAGATGGCGAAGGCCTCCAGGAACTGTTCATCGTTTCGGTTGAAGGACTTCACTTTCCCCGATGCCTCATCCATCTTGTTCACCAACTGAC

Function

NR:

description
cGMP-specific 3',5'-cyclic phosphodiesterase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU898803 True 1188 lncRNA 0.51 3 28353967 28358180

Neighbor

gene id symbol gene type direction distance location
LOC110531872 LOC106577502 coding upstream 13510 28331806 ~ 28340457 (+)
ank2b LOC103361685 coding upstream 193713 27995879 ~ 28163412 (+)
LOC110531867 LOC106577513 coding upstream 581244 27768636 ~ 27772723 (+)
trnaa-ugc-34 NA coding upstream 695411 27658481 ~ 27658556 (+)
LOC110531865 LOC106577518 coding upstream 706602 27633636 ~ 27647365 (+)
LOC110531876 LOC106577496 coding downstream 90082 28448262 ~ 28548376 (+)
LOC118966204 NA coding downstream 139037 28497217 ~ 28497272 (+)
LOC110531878 LOC106577495 coding downstream 195589 28553769 ~ 28663634 (+)
LOC118966022 NA coding downstream 534868 28893048 ~ 28894058 (+)
LOC110531882 LOC106577492 coding downstream 678275 29036455 ~ 29039588 (+)
G789294 NA non-coding upstream 11942 28341665 ~ 28342025 (+)
G789313 NA non-coding upstream 22655 28331029 ~ 28331312 (+)
G789312 NA non-coding upstream 22961 28330732 ~ 28331006 (+)
G789311 NA non-coding upstream 23653 28330019 ~ 28330314 (+)
G789310 NA non-coding upstream 24092 28329672 ~ 28329875 (+)
G789339 NA non-coding downstream 22951 28381131 ~ 28383324 (+)
G789472 zcchc4 non-coding downstream 78408 28436588 ~ 28437550 (+)
G789481 NA non-coding downstream 88947 28447127 ~ 28447334 (+)
G789493 NA non-coding downstream 173633 28531813 ~ 28539147 (+)
G789485 NA non-coding downstream 309082 28667262 ~ 28670285 (+)
taf6l taf6l other upstream 866444 27480038 ~ 27487523 (+)
G787022 LOC106577527 other upstream 974303 27379332 ~ 27379664 (+)
G786496 LOC106577539 other upstream 1940435 26413112 ~ 26413532 (+)
G786218 NA other upstream 2395100 25874527 ~ 25958867 (+)
G785962 LOC105020693 other upstream 2611058 25712997 ~ 25742909 (+)
rbpjb LOC106577485 other downstream 981801 29248127 ~ 29342203 (+)
LOC110531891 NA other downstream 1924495 30282637 ~ 30288163 (+)
G793757 LOC107579696 other downstream 3237816 31595996 ~ 31596918 (+)
LOC110531915 LOC106595846 other downstream 3395155 31753182 ~ 31757502 (+)
zgc:112271 bola2 other downstream 3764502 32122682 ~ 32124851 (+)

Expression


Co-expression Network