G789863 (LOC100194703)


Basic Information

Item Value
gene id G789863
gene name LOC100194703
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 28528820 ~ 28652471 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU899399
ttggaaggaacacacaacactatgcgtggagaaaaaaaaggcacagcacagcaacATCGAAAACTCATCCAACCTGTTAAGTATGGTAGATGGAGCATCATGGTTTGcgactgctttgctgcctcataattgtttacGTGCGATTcatttaagcagactgtgtttgtctattgttgtaacCTAGATGAAGagcagatcaaattgtatgaccaattcatgccgaaatccaggtatttccaaagggttcacatactttttcttgccactgtacagcTATTTaccagctacagtacagtatgctgcACAGACTCCATCCTATACTAAATCAACTGGACTCTGTGACATCATCATCACGAGACAAGCCCGTCGAGGATCTCCAAATGGGCCGTGCAACACCTACTGCTTTaaaacaacagtgacagcaaCAACTCTAGTGACGGTACCGTTGTGTAACTAACTATCACAGTGTATAGTTTGTATTTAAATGTTGCTATATAGTATGCTCAGTGCCCAGTTTATAATTTAGAAAGCAGGCCTATTTCCTCGGAAGAGTTAGTGAAATGGTGTATTTTCTGGTGCGTTCTATTGATCATAAGCATATGTCTGTTAGAATATACACAATCTAAACTGAAGACTGTTAACTCGTAAATTGTGAGAAATATGCTGTTGTCATATTTCATATGTATTGTAGATTGTATCGGCCTGTAGAATAATCCTCCGTCGTATGACACAGAAGATAAGGCATTACACAGCACATGCATTCATTTATTTTGACGGCATTTTGGTCCTCTATTTGAAATACATTCGCACGCATACAAGAAAGGAGAAAGACCCGGAAAAAAACACAACATTTAAAAGGTGACAAATACACAAAGGGTTATAAGTGGAACAAAAAAAGTGACCAAGACACCATCAGCACCACAACACCAAGTGATTCATATCCTCGACCAATCCCAATGGACACACAACAACGTGATCAGGTCACATGTACTACTAGGACCAATGAGCTACTGAGATGAATATGGGCAGGCATGGACGGGATGAGCAGACACTAACACAATCAGGGAGGGGGTGTGAGAAATAAAAAGTGATCATTAAAAGGTGCAATACGGCCACTTGTGTTTTCCATGTCGGACTTTTGACTCAGGCAACAATGATTTTGCAGTGTACTGTACGGACACATTCTCCACAAAATAATTCtacagtacagtcgtggccaaaagatttgagaatgacacaaatatttattttcacaaagtctgctgcctcagtttgtatggtggcaatttgcatatactccagaatgttacgaATAGTGAGCAGATTAATTGCagttaattgcaaagtccctctttgccatgcaaatgaactgaatccccccaaaaacatttccactgcatttcagccctgccacaaaaggaccagctgacatcatgtcagtgattcgctcgttaacacaggtgtgagtgttgacgaggacaaggctggagatcactctgtcatgctgattgagttcgaatcacagactggaagcttcaaaaggagggtggtgcttagaATCATCGTTCTTCCCCTGTCAACCAtgtttacctgcaaggaaacacgtgccgtcatcattgctttgcacaaaaagggcttcacaggcaaggatattgctgccagtaagattgcacctaaatcacccatttatcggatcatcaagaacttcaaggagagcggttcaattcttgtgaagaaggcttcagggcacccaagaaagtccagcaagtgccagaaccgtctcctaaagttgattcagctgcgggatcagggcaccaccagtacagagcttgctcaggaaaggcagcaggcaggtgtgagtgcatctgcacgcacagtgaggcaaagacttttggaggatggcctggtgtcatgaagggcagcaaagaagtcacttctctccaggaaaaacatcagggacagactgatattctgcaaaaggtacagggattggactgctgaggactggggtaaagtcattttctctgatgaatcccctttccgattgttcgAGGCATCtggaaaaagcttgtccggagaagacaaggtgagcgctaccatcagtcctgtgtcatgccaacagtaaagcatccttaCACCATTCatatgtggggttgcttctcagccaagggagtgggctcactcacaattttgcctaagaacacagccatgaataaagaatggtaccaacacatcctccgagagcaacttctcccaaccatccaggaacagtttggtgatgaacaatgccttctCCAGCATATGGAGCAcattgccataaggcaaaagtgataactaagtggctcagggaacaaaacatcaatattttgggtccagggccaggaaactccccagaccttaatcacactgtgaatttgtggtcaatcctcaagaggcgggtggacaaacacaaacacaaaaattctgacaaactccaagcattgattatgcaataatgggctgccatcagtcaggatgtggcccagaagttaattgacagcatgccagggcggattgaagaggtcttgaaaaagaagggtcaacactgcaaatattgactctttgtatcaacttcatgtaattgtcaataaaagcctttgatacttatgaaatgcttgtaattatacttcagtattccatagtaacatttgacaaaaatatttaaagacactgaagcagcaaacttggtggaaattaatatttgtgtcattctcaaaaccgtATGTGGCTACAAAGAACACTTGGGTGTGTTATGGAAAGTCACTATTTCAGATGCCTGGGTGACACATCTGAGATAAGACCCATTTGACTGTAAAACCACCACCCTCTGCAGTTGCAGTAACAAGGCACTCAAAGGTAAATGGGGACTCTGTCGTACTCTGTTGCCTGAGTTTCCGACGCCTTTCCAATAGAAAAAGACGGGAGATGGGTCAAAGTCGCTTGAAAACAATGGGCCACGGCGAGAAGGACGTGAGTAGGAGGAAGTTGCCCTATAGCCACTGATCTTAGGTCGGTTCGATGCTTTCCCGCCTAATGGTAAGAGTTAGGATCGCGGACAGGAAAGCTGATCCTATGGCTGTGCCTACGGGCAACTTCTACCCGGAGCGTATGGGACAGGCGACACGCAACACATCGTGCAGAGACCAGACCAGGAAGTTACACCAGGAAGTAAAGGAGAAGAGATGACTGTACCATGCTGCTTGTAGATAGGGGGTTTTCTATAGATATTATCTATCTTGACCTTAGTCTCtgaagatgagaggaggagaggcagagagaaatgaaAGAAGCCcaggatgagagaaagagaaaaggagagagagagagagagagagagagagagagagagagagagagagaagcatgagTTAGCAGTTATTGAGGGATGGAATAGTCTGAGAAGCAGCAGTAGGATATGGGGCAGCATTCTTTATGGTTGATCCAATGCAAAACATATTATATTTTTATTAGAACTGGCAAGACAGGGTATTATCGCCAATAAATCATCACTTGCTGTCACTGTTcatgcaacacacacaaaaacatgtcATTTTGATCCAGTCCTATTGTAATGTGAAGCAGACACTCGGTTGGGTATCCCCAGAACAATGGTAATTGTTGATCGATGTTGTATCCAACAATGCATTTATTCGAGTTTTCCAAAAGTCATCGGTAATAGAAACCATCATATATTTCTCCCTTACTACAACCCATCGTTCATTACTGCTTATAGACCAAATAAACAAATAAGCATATCAAATAACAAATAAAAGGGCAAATGACTAAATTCAACTAATTCAATTAAACAATTGTGCGAGTGActctttaaaaaacattttttttacacaatAATTGACACAGTATGTCTGTCCTAAGCTGATCCAATGCGTTTAGCGTTCACAGGACCCAAACACCATTGTGTTAGCTAGCAACAATACATTAACTGCGCTCTGCTCATGAAATACAACATGTGTGGGGTCCCTTTCTGCCCTGTTTCAGCCACTGCCAGCGCCAGGGAGTAATACACGTATAAAATCCATACGATGGTTACAAAACACATGAAGTAGATCATCACTTAGCTTTGTTCATTTATTTACGTCAACTCCATCCAAGTACGGGGACTTTTCCATGTGGGTGACTGACACTGTGATAGTGAATGGAAATAATGATGATGAAtccaaaaaaaaagggggcttTTCACTAGAAAAGTCAACGTTGTGTCCATTGCAATGTGCTGCAAACGGTTAACACTAATCAAAGGGCGGTGGACAGAATATGATGCAGGGTCATAGACCTAAGTTAAGACTTCTCAAATCGCTGTCCCATTACGGCGTCTGTGACAGCAGGcgctccattttaaagtagtcaatatCTTCTTCTACTAGTTCTATGAGTTGGGAAACAAACGGAAAGGATGGATACTGCCACCTGGAGGGTGTTGTTTGAGCCGGTATAAAGCCaatgttggtgatttactgccatcTGCAAATTAGGGATGGGCACGGTTGATTGAATATCCGAACCGACGTTAGTATTCGATTACTTGAGTAAGTGGGAATGCTGGCCTAATTTATCAATGAGAAAGCTTTGTCTAAATTAAATGATCCTTTGTGAAGTTTTTACCTACAAGGATATACTGCTGTGTATTAAACCCTTCATGTTGCCCTGACATTGGTACGCTGTTTTCCTCACTTCAAAAAGAAATGACAGGCACTCACCTAACAGAGTTTCCACAAGACCTCCTGAAACAGATAAATGTTCTAACAGAATCAGTTCTATAATGGCGAAAATTTGACTACTCTTTTGCTTTTTCTGACAATTTACCAGAGAAATTACCAGAGAAAATGCACCCTGTCCGGTGTTTACCTTTgccattgtcacgccctgaccttagagagacgttttagttctctatttggttaggtcagagtgtgatgtggggtgggcattctatgttttgtatttctgtgtgtttggccgagtgtggttcccaatcagatgcagctgtctatcgttgtctctgattgggaatcatacttaggcagcctgttttgccaccgtagttgtgggtagttgactttgttagtggcctgtatagccctaggaAGCTGCACGGTCGGtttttattatgatttattttttgggtgtttcttgttttgttggtgactttctaaataaaggaaaatgtacactcaccacgctgcaccttggtccggtcatttccctgaccACGTTCGTGACAGCCATGTGCTTTGCGTCGTTCTGATATGTCGAGAGTcgagagtaattacacttctggGAGGGACTATCGAGTATCCGGATATCCCAAAAAATGTCATGATATTATTCAAATAGTCAAATTATTTCAAATTACCATCCCTAGTacaaatactatttcaaatatcTCAATTACTATCACATACATTTCGAAGTAAGTATTCAGATATTGTTTATTTGAAAAGACAAGTGGTTGAATACTGGAATGTattggaaatacacttggaaagtattgTCATGTATTTGAAGAATTTTttcaaatacaaataaatattcccatgcatttgaacccaggttcTAGGAGTATTTTAAagaatgtatttggaaataagTATCTAAAAATATTATATAATTATATAAGTTATTTGAAAATAAGCAGTTGTTGATATTGGCCACATTACTTGAAAACACCAAAATACAAAGTACATATTTAAATAacaaatacacatgtatttgaacACAGGTCTGGTTCTCACGAGTGTAATTctttggctgatccctcctgatgacctggataGAAtgatgtgatccttccttaacccataggaagtgATGACCCTTCTCAGTGGCGCTGCCCATGCAGTCCGGTTCTATGTCAGCCATTGCTCGTGACGTCATAAAAAAATCGCTTTGAGTGCAGCAGTTACAACGTGGTTGCATTATAAGAGCATATGATAATGTTGATCCAACATGTCTGTGAAAGTGGAATCTAACGAATCTCACTTTTACCTGTGAAACTGAAGAAACATTTAGACAGACCTCAAcatattgtataggacaggatcCCAACACGGgataaagaaagaggagagagagaaagagagagagaaagatacatttAGATAGAGCGAGGGAAAGGAGTCAGGGAAATCAAATGGACAGGATAGGTCCGAAAGAAACCCTTTGACATGGATAAAACAGTAACACAAGAAGGCAAGGAGAACAGAAAAGGGTTAATCCCAGACATCTGATATACTGTTATTGTATAATGTCCATCCACCTACTTAGATCTGTTACCTAGACAGACCTGGACAGACAAGAGAGCAGACAGACGGGCATGgtgcaatagagagagaggtcgTGTTGAGGGGATCAAGGGCCACGGGGTCAAAGGTGAGAGGTCAAAGCGAAGTGGAGAACCTACCTGGTACGTGGAAATGCCTGGGAGCAGCCACATAGGTGGAGGAGGGAGATTTGCCGTCGGAATAGGTGGACAAACTGGGTGTACTCCGACCACTTTCACTACCTCCAatggggaaaggagggatggggagggacaggggagagcaagAGCCGTGGACGAAAAAAGGGGGGCAAAGAGAGGAGCAAAGAGTCATGCTGTTGTGCTTACTGGTCAAAGCTTTAACTATGAAGCGGAACCAACTTTATTCATTACAATTATCAACTGACTTGATAACCCAACCACTGGTTACTGA

Function

NR:

description
transposase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU899399 True 6752 TUCP 0.42 3 28528820 28652471

Neighbor

gene id symbol gene type direction distance location
LOC110531875 zcchc4 coding downstream 85199 28436541 ~ 28443621 (-)
LOC110531873 LOC106577501 coding downstream 96814 28342139 ~ 28432006 (-)
LOC110531871 LOC106577503 coding downstream 218213 28294175 ~ 28310607 (-)
camk2d1 LOC106577507 coding downstream 245360 28163668 ~ 28283460 (-)
LOC110531868 LOC106577509 coding downstream 631982 27894036 ~ 27896838 (-)
LOC110531879 LOC106577493 coding upstream 14768 28667239 ~ 28993223 (-)
LOC110531880 NA coding upstream 311973 28964444 ~ 28966956 (-)
LOC110531881 LOC106577491 coding upstream 390104 29042575 ~ 29045196 (-)
LOC110531883 LOC106577489 coding upstream 417576 29070047 ~ 29139723 (-)
LOC110531884 LOC106577488 coding upstream 487879 29140350 ~ 29174588 (-)
G789856 NA non-coding downstream 11254 28517036 ~ 28517566 (-)
G789436 NA non-coding downstream 145282 28382749 ~ 28383538 (-)
G789435 NA non-coding downstream 146390 28381856 ~ 28382430 (-)
G789433 NA non-coding downstream 147416 28380379 ~ 28381404 (-)
G789403 NA non-coding downstream 200648 28327859 ~ 28328172 (-)
G789945 NA non-coding upstream 10980 28663451 ~ 28666058 (-)
G789967 NA non-coding upstream 33594 28686065 ~ 28688698 (-)
G789968 NA non-coding upstream 36898 28689369 ~ 28690678 (-)
G790037 NA non-coding upstream 170262 28822733 ~ 28823470 (-)
G790120 LOC106575828 non-coding upstream 282946 28935417 ~ 28939614 (-)
G789228 LOC106577504 other downstream 381841 28145220 ~ 28146979 (-)
LOC100136672 sstr1b other downstream 694556 27821574 ~ 27834414 (-)
G788495 NA other downstream 965295 27563162 ~ 27563525 (-)
G788408 LOC106577523 other downstream 1060498 27463292 ~ 27468322 (-)
LOC110531854 LOC106577527 other downstream 1147531 27376312 ~ 27381485 (-)
G790535 NA other upstream 396427 29048898 ~ 29049244 (-)
G790551 NA other upstream 416381 29068852 ~ 29069187 (-)
G790598 NA other upstream 478903 29131374 ~ 29149017 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_008848 CU655829.1 non-coding NC_007126.7 CM002899.2 47721873 ~ 47725335 (+)
rainbow trout (Oncorhynchus mykiss) G210422 NA non-coding NC_048566.1 CM023220.2 98813477 ~ 98819856 (+)
striped catfish (Pangasianodon hypophthalmus) G201523 NA non-coding NC_047606.1 CM018552.1 23575076 ~ 23584409 (-)