G789945


Basic Information

Item Value
gene id G789945
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 28663451 ~ 28666058 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU899489
CCGCAATGTGGGTTCACATTTTCTCACTGACATATCTCTTGTCCCATTTCAGTTTTGAAGGTGTTTATACAAAGATAGGCTTTCAAAATGGATTAGACACTTaacttgtcctcctctccctcatctcgtGGTGACTATGACTAGCTCTAGCTCGCCGTCTAGTGGGACTTTGGCCGGAATTCAATCCCATGGCAGGTTATAGACATTGTGGCTTTTAATGgggtagttcacccaaattacaaaatgacacattgATTTCTTTACACGGTAAGCAGTCTATGTACAACGTGTGACAGCAATCCAAGCTTtgggtttagtttccctggcagtGGCTGGTACCTTTTCCAAatgctaacgttttagcatttctggtacaaatcccattcaagtcatggtaTCACGATATCAGAATTTTTCGCATCATGTTCAAATCATCAATAACTGACGTTTGGTGAGCTTCACAATAACATGTAGATACTTTTGGATGATGCACGAACAATGCTAATATTGGTCCCATGGCTtcaatgggatttgtgccacaaatgctaaaacgttagcatttcgaaaacagtgccagggaaactaatCCAAAGCATGGAtttctgtcataccttgtccattgACTGCCTACACGGTAAGGAATATGTCAATATGTGATTTTGTGTAAACCATCcctttaaaggcaatgttctcaGGTTTGCGGAGATCCAATTCACGGCAAATGCTGTTTATATATGCGATCGGATTTGAATCCCGGCATCAATCTGACAGAATGGAAAAgctatacaaatatttacactctGATAACTTGAGAAACCTCCATTGGTGGCCATTTTTGCTATGCACAGCCTCATATTCCAACCAAATACACCATAAACCAGCCATTTTAAAAGGTAAATGTGCCTTTGAGTAAATGGTAAAAGCTTGTTTGCAGTAGTACATCAACATGCTACTTCTCACTCCTACAAAGCACAGTGGTTAGGTTACACTGAGCTGTGTGGATACGACAGTATTTGCAGTGTACTGTAGATGTGGTAAAAGCATTACCAAAAGCACCATTAGAAATAAAATGAcaaatgtgtgtgcttgtgtgttcaCGTGCACGTGCCTATGTGGTGTGTATGAGCTGAAACGTGTTGCTACAGTAGAAGTTGGAAGTTCAAGAATCCACAACTAGGTCAGTCTCTTGTTGAAGCGGAGAACACACAGTATTTCTGACCATACAGGCCTCTATTTCTAACAGTGTATTAGTGATGGGGATGGAATGTGCCTTGGAGACGTTtcaacacgcgcacacacacacacggtcgtgCGCACTAACACGCAAGCCACAAacacgctcactcacacacacagtcgtgcGCACTAACACGCAAGCCACAAacacgctcactcacacacacacagaccacaaacacactcactcacacacagtcgTGCGCACTAACACGCAAGCCACAAacacgctcactcacacacacacacagtcgtgcgCACTAACACGCAAGCCACAAAcacgctcactcactcacacagtcgTGCGCACTAACACGCAAGCCACAAAcatgctcactcacacacacacacagtcgtgcgCACTAACACACAAGCCACAAacacgctcactcacacacacagtcgtgtGCACTAACACACAAGCCACACACCAGATCAGATCACAGGGCTACAGTACACCAGTGGCATGATTAAAAGAGCTGGGCCGAGGCTCCTGGTTGTCAAGCTTAAATATAAGAGGCCACGTTACTTGAGGTTTTAGGATTTTTCCAATACCAGAGGCCAAACTCACCAGGACACGACCACGCCTTAGCCTGACCTGCACTTTACTGAGTGAAGCATTCCATTGGCCCACTCACAACATCAACCAGTAGGGAGTAGGTGTATTGCTGGTTTGATGATCTGCAAATCATCTGGATTGCCTAACAGTGATACTGATGATTCGATTAACCCATTTAGATGACGTGAACATTAGTGGCGCAGTGCAGTTACCACTCTAAACATATGCTTGTGAACAAGAGAGCTTCTAACTGAGTAGGAAAGATAACATGGGCGCTTACTTATGGAGAGCCAGCTATACTATAAAACAAGCATTAAATATTATCAACATAAATAATCACAGGGATGTTTACTTAATAAACATTTACAAATAAATACTTGGTTTTGCACTTGATTTATGAACCCCAAGAGTTGTAGAAACCAGATTTGTATGTGATGGACAAACAGATCACAAAAGACCGTCTATGAATGGATGTCTGCTTGAAAAGAAAGAAAACAATTGGACGAATACCAAAACCGCACGACAGAGTAGTTCAAACATGCCAGATATAATACACGGTATTATACAATAGTAAGCTACAAAAAGAGTGCTATTTCTTTATGTTTTGGAAATAAAGTATACTCAAATCAGCATCGTCTTTCTGGTTGGCTATGCTACGCTTGTAGTGTACTCCTCTTCAACCTTCTTCCCCCATGTGAAAAGTgaataaatatatacacacacacaaaaaaacaagctGGTACAATAGGATCGTTTGTGAAGAGAGTTGCTGCTTATGTGCCAGTCTTCAT
>TU899490
CCGCAATGTGGGTTCACATTTTCTCACTGACATATCTCTTGTCCCATTTCAGTTTTGAAGGTGTTTATACAAAGATAGGCTTTCAAAATGGATTAGACACTTaacttgtcctcctctccctcatctcgtGGTGACTATGACTAGCTCTAGCTCGCCGTCTAGTGGGACTTTGGCCGGAATTCAATCCCATGGCAGGTTATAGACATTGTGGCTTTTAATGgggtagttcacccaaattacaaaatgacacattgATTTCTTTACACGGTAAGCAGTCTATGTACAACGTGTGACAGCAATCCAAGCTTtgggtttagtttccctggcagtGGCTGGTACCTTTTCCAAatgctaacgttttagcatttctggtacaaatcccattcaagtcatggtaTCACGATATCAGAATTTTTCGCATCATGTTCAAATCATCAATAACTGACGTTTGGTGAGCTTCACAATAACATGTAGATACTTTTGGATGATGCACGAACAATGCTAATATTGGTCCCATGGCTtcaatgggatttgtgccacaaatgctaaaacgttagcatttcgaaaacagtgccagggaaactaatCCAAAGCATGGAtttctgtcataccttgtccattgACTGCCTACACGGTAAGGAATATGTCAATATGTGATTTTGTGTAAACCATCcctttaaaggcaatgttctcaGGTTTGCGGAGATCCAATTCACGGCAAATGCTGTTTATATATGCGATCGGATTTGAATCTTCTCACTCCTACAAAGCACAGTGGTTAGGTTACACTGAGCTGTGTGGATACGACAGTATTTGCAGTGTACTGTAGATGTGGTAAAAGCATTACCAAAAGCACCATTAGAAATAAAATGAcaaatgtgtgtgcttgtgtgttcaCGTGCACGTGCCTATGTGGTGTGTATGAGCTGAAACGTGTTGCTACAGTAGAAGTTGGAAGTTCAAGAATCCACAACTAGGTCAGTCTCTTGTTGAAGCGGAGAACACACAGTATTTCTGACCATACAGGCCTCTATTTCTAACAGTGTATTAGTGATGGGGATGGAATGTGCCTTGGAGACGTTtcaacacgcgcacacacacacacggtcgtgCGCACTAACACGCAAGCCACAAacacgctcactcacacacacagtcgtgcGCACTAACACGCAAGCCACAAacacgctcactcacacacacacagagtcgtGCGCACTAACACGCAAgccacaaacacactcactcacacacagtcgTGCGCACTAACACGCAAGCCACAAacacgctcactcacacacacacacagtcgtgcgCACTAACACGCAAGCCACAAAcacgctcactcactcacacagtcgTGCGCACTAACACGCAAGCCACAAAcatgctcactcacacacacacacagtcgtgcgCACTAACACACAAGCCACAAacacgctcactcacacacacagtcgtgtGCACTAACACACAAGCCACACACCAGATCAGATCACAGGGCTACAGTACACCAGTGGCATGATTAAAAGAGCTGGGCCGAGGCTCCTGGTTGTCAAGCTTAAATATAAGAGGCCACGTTACTTGAGGTTTTAGGATTTTTCCAATACCAGAGGCCAAACTCACCAGGACACGACCACGCCTTAGCCTGACCTGCACTTTACTGAGTGAAGCATTCCATTGGCCCACTCACAACATCAACCAGTAGGGAGTAGGTGTATTGCTGGTTTGATGATCTGCAAATCATCTGGATTGCCTAACAGTGATACTGATGATTCGATTAACCCATTTAGATGACGTGAACATTAGTGGCGCAGTGCAGTTACCACTCTAAACATATGCTTGTGAACAAGAGAGCTTCTAACTGAGTAGGAAAGATAACATGGGCGCTTACTTATGGAGAGCCAGCTATACTATAAAACAAGCATTAAATATTATCAACATAAATAATCACAGGGATGTTTACTTAATAAACATTTACAAATAAATACTTGGTTTTGCACTTGATTTATGAACCCCAAGAGTTGTAGAAACCAGATTTGTATGTGATGGACAAACAGATCACAAAAGACCGTCTATGAATGGATGTCTGCTTGAAAAGAAAGAAAACAATTGGACGAATACCAAAACCGCACGACAGAGTAGTTCAAACATGCCAGATATAATACACGGTATTATACAATAGTAAGCTACAAAAAGAGTGCTATTTCTTTATGTTTTGGAAATAAAGTATACTCAAATCAGCATCGTCTTTCTGGTTGGCTATGCTACGCTTGTAGTGTACTCCTCTTCAACCTTCTTCCCCCATGTGAAAAGTgaataaatatatacacacacacaaaaaaacaagctGGTACAATAGGATCGTTTGTGAAGAGAGTTGCTGCTTATGTGCCAGTCTTCAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU899489 False 2586 TUCP 0.42 2 28663451 28666058
TU899490 True 2408 lncRNA 0.43 2 28663451 28666058

Neighbor

gene id symbol gene type direction distance location
LOC110531875 zcchc4 coding downstream 219830 28436541 ~ 28443621 (-)
LOC110531873 LOC106577501 coding downstream 231445 28342139 ~ 28432006 (-)
LOC110531871 LOC106577503 coding downstream 352844 28294175 ~ 28310607 (-)
camk2d1 LOC106577507 coding downstream 379991 28163668 ~ 28283460 (-)
LOC110531868 LOC106577509 coding downstream 766613 27894036 ~ 27896838 (-)
LOC110531879 LOC106577493 coding upstream 1181 28667239 ~ 28993223 (-)
LOC110531880 NA coding upstream 298386 28964444 ~ 28966956 (-)
LOC110531881 LOC106577491 coding upstream 376517 29042575 ~ 29045196 (-)
LOC110531883 LOC106577489 coding upstream 403989 29070047 ~ 29139723 (-)
LOC110531884 LOC106577488 coding upstream 474292 29140350 ~ 29174588 (-)
G789803 NA non-coding downstream 111279 28454932 ~ 28552172 (-)
G789862 NA non-coding downstream 125903 28536883 ~ 28537548 (-)
G789856 NA non-coding downstream 145885 28517036 ~ 28517566 (-)
G789436 NA non-coding downstream 279913 28382749 ~ 28383538 (-)
G789435 NA non-coding downstream 281021 28381856 ~ 28382430 (-)
G789967 NA non-coding upstream 20007 28686065 ~ 28688698 (-)
G789968 NA non-coding upstream 23311 28689369 ~ 28690678 (-)
G790037 NA non-coding upstream 156675 28822733 ~ 28823470 (-)
G790120 LOC106575828 non-coding upstream 269359 28935417 ~ 28939614 (-)
G790515 NA non-coding upstream 341920 29007978 ~ 29008204 (-)
G789863 LOC100194703 other downstream 10980 28528820 ~ 28652471 (-)
G789228 LOC106577504 other downstream 516472 28145220 ~ 28146979 (-)
LOC100136672 sstr1b other downstream 829187 27821574 ~ 27834414 (-)
G788495 NA other downstream 1099926 27563162 ~ 27563525 (-)
G788408 LOC106577523 other downstream 1195129 27463292 ~ 27468322 (-)
G790535 NA other upstream 382840 29048898 ~ 29049244 (-)
G790551 NA other upstream 402794 29068852 ~ 29069187 (-)
G790598 NA other upstream 465316 29131374 ~ 29149017 (-)
G792267 NA other upstream 1649252 30315310 ~ 30357964 (-)

Expression


Co-expression Network