G789485


Basic Information

Item Value
gene id G789485
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 28667262 ~ 28670285 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU898997
CCAGAATGCAGGTTAAGTGCGATACACTTTCTGTTGAGGACTTCAACACATTTTTAATTGACCAAAAATCAAACAAACCCCAAAATAGTGATACAACTGCGGTCAATCGCACATAGTCTGTGTCAACAACAGTGAATCTCCTTCAGAAATATGTTGGATTCTCTTGATCCCcacaagggggtggggggggggggaaataataACAGACGACGTCACTAGAAAACTAAGAACAAGCCAAATATGAGCATATATATATGTACAAAAGATGAAGAACAGAATATCAAATCGAATAGTCCAGTGTGGTGTACTGTCTGTTCGTATCAGATAGGCCTACATTATCATGACTGTAACTGACTCACTGGTAAGCTTGAGATTGACTCTCAGCATTTGTCACTAAGACGTGTACTCTGCCTCAATCAGGACAACCCCATCATATGGCCCCAATATGTGAAGTACACTTGGTACACTTCTCTCTGGGCTGCACTCCTCAAGACTACATCGTTAGTGTAAATGAAATGTCCTGGGAAATGTGCAATGGGAAAGAAAGCTACTGACTAAGACTTACTTCACGTTATTACAGGAATTAAACAAAATGTATCCCAAATGCAATAGTGCAGAAGTGCAGGGTGTAGATTTGATCGTGAGAGATCCTTTCCAGTTAAACAATGGATACAACAAAAAGTAGCCTACCTATAAAAGTCTATGATACTTTGCTATACACAGAAATAATGCTGATACACGAGAAGCAAGCAATGGGTAATGAGAAAGCTCCCTGTGTCATTTTACTGTGATGGGGGCATCCAAAAAGACGTGTGTGTTTTCATATTCGTGTAAAATACTCACACTCAagtgactatatacagtgggaGGTTTTTCATATAAACATCTATGTACACAAACCAAATTATATAGGAGACCTACCACCATACCACTGCTAACTCTGCCTAATATAGGCTCATATAACGACAGCCACACCTTTATCTCCATGACGACGACCTTagtctctggggaaatgaactcACGTTGACCTCTGACCCGGGGGTTAACTTGGCGGCGCGGTCAAATTGTTATTAGTAAATAAATAAGTAGAGGAAATGCAAAAGGAAAGGTCATAGAGCAGAGGAGTCTGCGTCTTTTTAGGCACGGTGGGACAAACAATGACTTTTTCTTTTAACCAGGGACGTGACATGCTGTAGCTTTGCTAAAATATCAAACACCATACAAAGTGTCACTCCTTTAACCTCACCTAGTAATCAAGTACCGTAAAAACATAAAAATGACATATTTCATTATTATAGAGCATTGTTATACATTGCTGTATGGCGAATGGAGACCGTTTAAACAAGGACTGTATGTAAATAATGGTGAATGAATGAGGATTTTCCCACATGCTTCATGTTAGCTCGACTCTTAAATACCTGTATCTGGGATTTATAAACAGTGCAACACCACCCCTTAGTGCCTATTTGGGTAATTGCATTATTTTCATGAACGCAACCTTGCCTCAGTTCAGACCAATGATTTatttatacactagatgactTCTTCTGGGGCGCTGTGTTGACGCcactgtgcctccatcttggcactcccccaccagtgtaaaaaatattttggaagctatagaaatgcatttattaatgtctacatttgtttttgccagACGTATTTTATTCCAGACACGTTAaagcatacttttaaattatattatgtgagctaaacattcaaatatatataaatatataaacatttcccttaaagtatatatatttttgtgttaCTAAATGTTACTTTCCCCtctacaacaaaaaaaatcttaaatacatgtaattttggccttgaaacatttaattgagatactgtagaattccattaattcctatggaagactgctcctactggggagtgccaatatggccgaccggtggcttcaaagcctctcaatggccaatacattgcatcagcaatccagggtttatgtACATTATTGGTTCAGACTGCTCCCTTTCCACACCCTATCCTTATAACAACCCTGCAGATTTAAAGGGGGCATTTCATCTAATTCTTTCCTGAGAAAGAGTATTATTGCatttaagtgagagagagaaacagagatggcgTCAATTGTAAATTATgggattgttaaaaaaaaaaaaaaactcttcatTTTGTAGGATCCCCCAGAGTTGTAAACAAAGCTATTAATAACATATTTACCTCTCTTTTCTCCACTACTAAACCACAGTACCCAAACTGTGTGTGAGAATGATGTACTTTTCACAGCTATGGCCTGGTCATTGCATGGCTCTGTTTTGGTCATATTGTGTACCCCGCTATCCTTAGTGTACTATGATATCTGGGAACTACCTAGTGTGTGAAAACAGTCAGTGAAAAGATGAGTCTTACAGTACAGAGCGTTTTAAATAGCAGGCCAGTGGGTGGGGCTTCCTCTCTGTGATGTCACCGGAACTGTCCACCCTCACTGGGTGGCGTCCAATCAGTCTCTGCAGGGTTTAACCAATGAGAGCACACCGAGCAAACACGACACAGGGTGCAACGGACACTGGGTGCAAAGAACACTGGGTAAAAAGCAGAGTTGGCCCACACCCCTGATGTTACAGTAACgcagtggagggagggatagagggattgaGGGAGAAGATGAACGGAGGATACAGTAAGTGTCCCTCTGGTCCAGTGGCAAGAGCGAGAGCCGTAACAAGGGAGCGAGGGGccatggagagaaggagaggaagaggagagagagagctagagtaCTGCTAGACTGTAGTACTATGGTGGTTTCTCTTCCTCTGTAAGGGGAGTGGTGGATTGGttggtcagacagagagacagagaaggaaggCAGAGTAGAGTTCCCTGTGCTCGTTAGCATGGCTAGCTCTTTAGCATGGCTAGCTGGTTAGtgtgtccttgttcagccatcAGCTGGTCAGGTAGCTGTGCAGCTCTCTGGAGTTGATGCTCAGCACCACACCCGAGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU898997 True 3004 lncRNA 0.42 2 28667262 28670285

Neighbor

gene id symbol gene type direction distance location
LOC110531878 LOC106577495 coding upstream 3628 28553769 ~ 28663634 (+)
LOC110531876 LOC106577496 coding upstream 118886 28448262 ~ 28548376 (+)
LOC118966204 NA coding upstream 169990 28497217 ~ 28497272 (+)
LOC110531872 LOC106577502 coding upstream 326805 28331806 ~ 28340457 (+)
ank2b LOC103361685 coding upstream 507008 27995879 ~ 28163412 (+)
LOC118966022 NA coding downstream 222763 28893048 ~ 28894058 (+)
LOC110531882 LOC106577492 coding downstream 366170 29036455 ~ 29039588 (+)
rbpjb LOC106577485 coding downstream 577842 29248127 ~ 29342203 (+)
tbc1d19 tbc1d19 coding downstream 683831 29354116 ~ 29381669 (+)
stim2b LOC106577483 coding downstream 712807 29383092 ~ 29473789 (+)
G789493 NA non-coding upstream 128115 28531813 ~ 28539147 (+)
G789481 NA non-coding upstream 219928 28447127 ~ 28447334 (+)
G789472 zcchc4 non-coding upstream 229712 28436588 ~ 28437550 (+)
G789339 NA non-coding upstream 283938 28381131 ~ 28383324 (+)
G789323 NA non-coding upstream 309082 28353967 ~ 28358180 (+)
G789629 NA non-coding downstream 26408 28696693 ~ 28700897 (+)
G789754 NA non-coding downstream 253670 28923955 ~ 28996300 (+)
G790159 NA non-coding downstream 328294 28998579 ~ 28998779 (+)
G790172 NA non-coding downstream 344881 29015166 ~ 29020160 (+)
G790176 NA non-coding downstream 355113 29025398 ~ 29025622 (+)
taf6l taf6l other upstream 1179739 27480038 ~ 27487523 (+)
G787022 LOC106577527 other upstream 1287598 27379332 ~ 27379664 (+)
G786496 LOC106577539 other upstream 2253730 26413112 ~ 26413532 (+)
G786218 NA other upstream 2708395 25874527 ~ 25958867 (+)
G785962 LOC105020693 other upstream 2924353 25712997 ~ 25742909 (+)
LOC110531891 NA other downstream 1612390 30282637 ~ 30288163 (+)
G793757 LOC107579696 other downstream 2925711 31595996 ~ 31596918 (+)
LOC110531915 LOC106595846 other downstream 3083050 31753182 ~ 31757502 (+)
zgc:112271 bola2 other downstream 3452397 32122682 ~ 32124851 (+)

Expression


Co-expression Network