G789967


Basic Information

Item Value
gene id G789967
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 28686065 ~ 28688698 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU899518
CGGAATATCATAATGGACCTGCAACTTTGACTTCCTCCACTTCCACTCTGCCATTCTGCAATTTCTCTTTAATTGATTAGTTTCCTCACTCATCCAATGGGCTCTCTGTTTGGATGTGGCCCTTTTCAACCTTACTGGAGCTATGGCATCAATGGTTGCCCTTCATTTGCAATTAAAGTTATGAACTAAACCCTCACACGGGGGAAGGCAGAATAGGTGGTGGAGTATCGTTCATACACTCAATCAAATCTCTGTCAACTTCAGGTTTGAAATAGCGTTTCTTAATCATGTgttcagtattaccctgttctacGGGCAACAAGGTAGTAAAAAAATCCCACAGTGGTGATCAGATAAAGCAGCGTCAACAATGGAGGATATGTCAATAGAAAGCCCCtcggtaataaccaggtccagagcaTGGGTTATGGGTGgacccagtagaaagccccttggtaataaccaggtccagagtatggctgcgGTTATGGGTGGACCCAGTAGAAAGCCcattggtaataaccaggtccagagtatgggtTATGGGTGgacccagtagaaagccccttggtaataaccaggtccagagtatgggtTATGGGTGgacccagtagaaagccccttggtaataaccaggtccagagtatggctgcggttatgggtgggcccagtaacATGTTGGATAAAGTACATAGATCAAGATTCATAAATATTCAATGGCCTTGTAGTCAGTCTCTTTGTCAacatgaatattaaaatcacccaaCACAATGATTTTATCATAGTTCTCAAGGACAATAAACAATAGTTCAGATGATACAGTAAAGAAAGTGGGGCAGTGCTTTGGTGGCCTATACAGGGTTATGGCCAGCACTGGTGGGTAACATTTAAACAGTATGGCATGATGCTCAAAAGAGCCAAAGTCGCCAAACAAAATGTCCTTACATCTGAAAGCATTGGTAAAAATAGAGGCTGTCCCCCCCACCCCTTTTCCCTTTTCCGATAGAGGATGAAAACTTGTAATCTGGGAGGAGGTTTCAATAAGAGCGGCAGTACAGTCTGATgacagccatgtttcagtgagaaACATGCAATCAACTTTGAGCTCAGTAATGAGGTCATTCACGAGAAAGGTTTTACTTGTGATTGCTTTAACATTTAAAAGTGCCATATTCAATATAAATATAATCATGGATAAAGAGAGattgggagtgagagagggggataaaACAACAGCATCTGTGATCAAGATATGAGTTCACAGTTGCAGCCTATTGAATGGGGGGAATTGTTACATACGTAACGGAACAGATGTCAGGGCTGCTGACATGTTTTCCCATCAATCTGTTCCCAAAAGAACATGCTCTCACTGACAGTCTAAGAAAAATAAGTGCTCAAATTGGTACATTTTAATACATAAGTGAAAAAAATATACTTCCTCTTTTTTTTTCATAGTGATATATCGCCATCTAGTGGACATATACAATAACACATATCATACAATACTCTTCTGAATGCTTTTGAGTCCCTTAAAAGAGACCATTTAGGACAATCTTTTGTGCAG

Function

NR:

description
putative RNA-directed DNA polymerase from transposon X-element

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU899518 True 1564 lncRNA 0.41 3 28686065 28688698

Neighbor

gene id symbol gene type direction distance location
LOC110531875 zcchc4 coding downstream 242444 28436541 ~ 28443621 (-)
LOC110531873 LOC106577501 coding downstream 254059 28342139 ~ 28432006 (-)
LOC110531871 LOC106577503 coding downstream 375458 28294175 ~ 28310607 (-)
camk2d1 LOC106577507 coding downstream 402605 28163668 ~ 28283460 (-)
LOC110531868 LOC106577509 coding downstream 789227 27894036 ~ 27896838 (-)
LOC110531880 NA coding upstream 275746 28964444 ~ 28966956 (-)
LOC110531881 LOC106577491 coding upstream 353877 29042575 ~ 29045196 (-)
LOC110531883 LOC106577489 coding upstream 381349 29070047 ~ 29139723 (-)
LOC110531884 LOC106577488 coding upstream 451652 29140350 ~ 29174588 (-)
LOC110531887 LOC106577486 coding upstream 655683 29344381 ~ 29353599 (-)
G789945 NA non-coding downstream 20007 28663451 ~ 28666058 (-)
G789803 NA non-coding downstream 133893 28454932 ~ 28552172 (-)
G789862 NA non-coding downstream 148517 28536883 ~ 28537548 (-)
G789856 NA non-coding downstream 168499 28517036 ~ 28517566 (-)
G789436 NA non-coding downstream 302527 28382749 ~ 28383538 (-)
G789968 NA non-coding upstream 671 28689369 ~ 28690678 (-)
G790037 NA non-coding upstream 134035 28822733 ~ 28823470 (-)
G790120 LOC106575828 non-coding upstream 246719 28935417 ~ 28939614 (-)
G790515 NA non-coding upstream 319280 29007978 ~ 29008204 (-)
G790525 NA non-coding upstream 337812 29026510 ~ 29026713 (-)
G789863 LOC100194703 other downstream 33594 28528820 ~ 28652471 (-)
G789228 LOC106577504 other downstream 539086 28145220 ~ 28146979 (-)
LOC100136672 sstr1b other downstream 851801 27821574 ~ 27834414 (-)
G788495 NA other downstream 1122540 27563162 ~ 27563525 (-)
G790535 NA other upstream 360200 29048898 ~ 29049244 (-)
G790551 NA other upstream 380154 29068852 ~ 29069187 (-)
G790598 NA other upstream 442676 29131374 ~ 29149017 (-)
G792267 NA other upstream 1626612 30315310 ~ 30357964 (-)

Expression


Co-expression Network