G789968


Basic Information

Item Value
gene id G789968
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 28689369 ~ 28690678 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU899528
gaaaggagaaaaaTATCAAGTTAGAGCAATAAGGAGCAGAAAAGTGACATATCAAATTGAGCTTTATTTATTCACATTTCAGGCATGGAATGCAATGCAATTTGCTATACAGGAAAAAAAGGAATGAATAGCAATgaaaataaaacctgaaatattTACTACCCAACAAacataagataaacaacaaaagGATGACACACTGAGCAACTAAAAAGCACCCTGAGGAAAAACAAAGCTAAAAAGatgtgttttaagatctcttttatatatgtccacagtttcggcCCCCCCTCAGGTTCTCCGGCAGGTTATTTCAGAGGCTGGGTTTATAATAACTAAacgctgcctctccatgcctctttgtCTTCAGCTTtggggatagttaaaaggccagtggcCCTGAGGGACCTTCTGGGTACATAACTTAACAGCAGGTCTGACAGATATTGGGGTGCAAAAccgtggattgatttaaaaaaccAACGGAATGatctaaaactcacaggcagccagtacAGAGACCTTTAAactggtgtaatgtgtgctcttcATCTGGTCTGTGTCAGTACCCGCGCTGGGTTTCTTGGGTAGACCAAACAgaagagcattacagtagtcaagcctgcttgtaataaaagcatggaatGAGTCTCTCggtatcagcctgagagagaaacgtCAGCATCTGAAGAACATTCAAaggcaatgttcctcaggtggtacaaagctattttggtcacattcctaatgtgcGATACGAAATGCGATACGAAATACGAATACGAAATACGAATTTGTTCAGAATCTAAAGTATGTTTTTTACTTGGTGTTTTGTCTATATTGACCTTGAATTCAAATGTGCGGCtagattctctctctgtgctttggttccaacaataagtacctcggtcttgatttagctggaggaagttcCAACTATTTAAATCACTAATAAAGTCTAATAATTTATCCAATGGagctaaaatcctctggtgacacagaaatgtaaagttgTGAAAATCAATGCTGTACTACCTGATAACGCTGCCAAGGGGTAAAATACGCTATATAAACTGAACAGTACCGGACCCAAAATGGAACCCTGTGGAGCACCACACTTGATATGTATTTTCCCTGAGTTATGTTCACCAAGGGTGACAAAAAAAACTATTCACCGGTTAAATAGGTCCAAAACCAATTTAGAACTGGACCAGAGAGGCCAAcccacctctccagtctgtccagaaggacatcatggtcaacagtgttgaatgcAGC

Function

NR:

description
ORF2 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU899528 True 1278 lncRNA 0.40 2 28689369 28690678

Neighbor

gene id symbol gene type direction distance location
LOC110531875 zcchc4 coding downstream 245748 28436541 ~ 28443621 (-)
LOC110531873 LOC106577501 coding downstream 257363 28342139 ~ 28432006 (-)
LOC110531871 LOC106577503 coding downstream 378762 28294175 ~ 28310607 (-)
camk2d1 LOC106577507 coding downstream 405909 28163668 ~ 28283460 (-)
LOC110531868 LOC106577509 coding downstream 792531 27894036 ~ 27896838 (-)
LOC110531880 NA coding upstream 273766 28964444 ~ 28966956 (-)
LOC110531881 LOC106577491 coding upstream 351897 29042575 ~ 29045196 (-)
LOC110531883 LOC106577489 coding upstream 379369 29070047 ~ 29139723 (-)
LOC110531884 LOC106577488 coding upstream 449672 29140350 ~ 29174588 (-)
LOC110531887 LOC106577486 coding upstream 653703 29344381 ~ 29353599 (-)
G789967 NA non-coding downstream 671 28686065 ~ 28688698 (-)
G789945 NA non-coding downstream 23311 28663451 ~ 28666058 (-)
G789803 NA non-coding downstream 137197 28454932 ~ 28552172 (-)
G789862 NA non-coding downstream 151821 28536883 ~ 28537548 (-)
G789856 NA non-coding downstream 171803 28517036 ~ 28517566 (-)
G790037 NA non-coding upstream 132055 28822733 ~ 28823470 (-)
G790120 LOC106575828 non-coding upstream 244739 28935417 ~ 28939614 (-)
G790515 NA non-coding upstream 317300 29007978 ~ 29008204 (-)
G790525 NA non-coding upstream 335832 29026510 ~ 29026713 (-)
G790529 NA non-coding upstream 341768 29032446 ~ 29032737 (-)
G789863 LOC100194703 other downstream 36898 28528820 ~ 28652471 (-)
G789228 LOC106577504 other downstream 542390 28145220 ~ 28146979 (-)
LOC100136672 sstr1b other downstream 855105 27821574 ~ 27834414 (-)
G788495 NA other downstream 1125844 27563162 ~ 27563525 (-)
G790535 NA other upstream 358220 29048898 ~ 29049244 (-)
G790551 NA other upstream 378174 29068852 ~ 29069187 (-)
G790598 NA other upstream 440696 29131374 ~ 29149017 (-)
G792267 NA other upstream 1624632 30315310 ~ 30357964 (-)

Expression


Co-expression Network