XLOC_027048 (apex1)


Basic Information

Item Value
gene id XLOC_027048
gene name apex1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 5333988 ~ 5340530 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053318
CTCATGCACAATCACATTCATCTACCCGTCCGTGCGGAGTGGTGCACACTTCTGCACAGATTGAGCTTTCTCTGTTATCTGAACTAAACAATAAAGTGTTGGCATACTGCAAGCACATGCATTTTGCTTTATGCAGATCACGCACTTTATGTGTACGTGTGTGTGCTGTCAGTTTCTTTCGTGTGTGTGGCCTGAAAACAACTGTAAACATGCCCAAAAGAGCCAAGAAGAACGAGGAAGGTGTTGATGGAGAGTCTGACAATGGAACTGctgcaaagaaagagaaaaaggggAAAGAGCCCGAGGCCCCCATTCTATATGAAGATCCTCCAGAAAAGCTGACCAGTAAGGACGGCCGGGCAGCCAATATGAAGATCACCTCCTGGAATGTGGACGGCCTGCGGGCGTGGGTCAAAAAGAACGGACTTGATTGGGTGCGGAAGGAGGATCCAGACATCCTGTGTCTGCAGGAAACCAAGTGTGCTGAGAAAGCTCTGCCGGCGGACATCACTGGCATGCCAGAGTATCCACACAAATACTGGGCAGGATCAGAGGATAAGGAGGGCTACAGTGGAGTGGCCATGCTCTGCAAGACCGAACCACTCAATGTCACCTATGGCATTGGTAAAGAGGAGCACGATAAAGAGGGCCGGGTCATCACTGCCGAGTTTCCTGATTTCTTCCTGGTCACGGCGTACGTGCCTAATGCCAGTCGTGGTTTAGTGCGGCTTGACTACCGCAAGACTTGGGATGTGGATTTCCGAGCCTACCTGTGCGGTTTAGACGCGCGCAAACCCCTGGTGCTGTGTGGAGATCTGAACGTGGCCCACCAGGAGATCGATCTGAAAAACCCCAAGGGAAACCGCAAGAACGCGGGCTTCACCCCTGAGGAACGGGAGGGCTTCACACAGCTCCTGGAGGCCGGCTTTACTGATAGTTTTCGGGAGCTCTATCCAGATCAGGCCTACGCCTACACCTTCTGGACCTACATGATGAACGCTCGCTCCAAAAACGTGGGTTGGCGTTTGGACTACTTTGTGCTGTCGTCTGCTTTGCTGCCGGGTTTGTGCGACAGCAAGATCCGAAACACTGCCATGGGAAGTGATCACTGTCCTATTACCTTGTTTTTGGCAGTGTAGGTCAGGGTTTTTGTTGTCAGGGCTATGAATATATTTAGTTCCTTTAAAAGAGTCCCTGGTTCACTTCTttcatatatagacacacacacataaatatcgAGCTCTGCTAGTCTTAGAGTTGCATTTCCTTTCTTATAAAAGCAAACACAAGTACTAATGTAGGTATCTGATTGGTGCAGACACATTGAAGAGGATCACGGTGGATTGATAAATCGTTTTATACCATATGCACACTAtgctaaacattaaaaatatgtaataaatctTCATAAATGCAGGctcttgtctcttttttttttttttgtaaaattacaaaaaaaaggtattttacaagaaaataaaaGGCCCACGAACATTCAGTTCCTTTAAAAGAGTCCCTGGATCACATTTTACTTCatgcatagacacacacacacacacaaaaacacacacagaaaatttAACTCTATTAGTCATTACTCTTCTAAAAGCAAATACAAGTACTAATGAAGGTATCTGATTGGTGCAGACACATTGAAGGGGATCATGGTGGATCATCTAATTCTTTAACACCATATGCTCCGTCTGCTAAACATTCGACATTAAAATATGAAAGATTAATCTTCATGAATGCAGACGCTCATTTGTAAACTCCTCAGACTGTTATGTGAATGACTGACCCTGCCAGACTACTGTAATAAACATCATCCAGTGCTGTGATTTAGAGTTGTTATCACCTAATGACTTATAGGAGATCTCCACCTTATAGGAGATCTCCACCTTATAGGAGATCTCCACCTGCAAACCTCTATGATGTGCTTTGGATTTTGTCTTTGGTGCTATTTCACCCGTTTGGATTTGACAGTACTCTGATTTCTCTGAAGTTATTGGAAGTTAAATGTTACTTCTTTCGCAAACTGGATACAAAAGATCTGTGATTTTTGCTTCTgtgatgtttttcttttgttttgttctgtctgtagatgttttttcatgttttgaaataaagtagtttata
>TCONS_00053317
CTCATGCACAATCACATTCATCTACCCGTCCGTGCGGAGTGGTGCACACTTCTGCACAGATTGAGCTTTCTCTGTTATCTGAACTAAACAATAAAGTGTTGGCATACTGCAAGCACATGCATTTTGCTTTATGCAGATCACGCACTTTATGTGTACGTGTGTGTGCTGTCAGTTTCTTTCGTGTGTGTGGCCTGAAAACAACTGTAAACATGCCCAAAAGAGCCAAGAAGAACGAGGAAGGTGTTGATGGAGAGTCTGACAATGGAACTGCAGctgcaaagaaagagaaaaaggggAAAGAGCCCGAGGCCCCCATTCTATATGAAGATCCTCCAGAAAAGCTGACCAGTAAGGACGGCCGGGCAGCCAATATGAAGATCACCTCCTGGAATGTGGACGGCCTGCGGGCGTGGGTCAAAAAGAACGGACTTGATTGGGTGCGGAAGGAGGATCCAGACATCCTGTGTCTGCAGGAAACCAAGTGTGCTGAGAAAGCTCTGCCGGCGGACATCACTGGCATGCCAGAGTATCCACACAAATACTGGGCAGGATCAGAGGATAAGGAGGGCTACAGTGGAGTGGCCATGCTCTGCAAGACCGAACCACTCAATGTCACCTATGGCATTGGTAAAGAGGAGCACGATAAAGAGGGCCGGGTCATCACTGCCGAGTTTCCTGATTTCTTCCTGGTCACGGCGTACGTGCCTAATGCCAGTCGTGGTTTAGTGCGGCTTGACTACCGCAAGACTTGGGATGTGGATTTCCGAGCCTACCTGTGCGGTTTAGACGCGCGCAAACCCCTGGTGCTGTGTGGAGATCTGAACGTGGCCCACCAGGAGATCGATCTGAAAAACCCCAAGGGAAACCGCAAGAACGCGGGCTTCACCCCTGAGGAACGGGAGGGCTTCACACAGCTCCTGGAGGCCGGCTTTACTGATAGTTTTCGGGAGCTCTATCCAGATCAGGCCTACGCCTACACCTTCTGGACCTACATGATGAACGCTCGCTCCAAAAACGTGGGTTGGCGTTTGGACTACTTTGTGCTGTCGTCTGCTTTGCTGCCGGGTTTGTGCGACAGCAAGATCCGAAACACTGCCATGGGAAGTGATCACTGTCCTATTACCTTGTTTTTGGCAGTGTAGGTCAGGGTTTTTGTTGTCAGGGCTATGAATATATTTAGTTCCTTTAAAAGAGTCCCTGGTTCACTTCTttcatatatagacacacacacataaatatcgAGCTCTGCTAGTCTTAGAGTTGCATTTCCTTTCTTATAAAAGCAAACACAAGTACTAATGTAGGTATCTGATTGGTGCAGACACATTGAAGAGGATCACGGTGGATTGATAAATCGTTTTATACCATATGCACACTAtgctaaacattaaaaatatgtaataaatctTCATAAATGCAGGctcttgtctcttttttttttttttgtaaaattacaaaaaaaaggtattttacaagaaaataaaaGGCCCACGAACATTCAGTTCCTTTAAAAGAGTCCCTGGATCACATTTTACTTCatgcatagacacacacacacacacaaaaacacacacagaaaatttAACTCTATTAGTCATTACTCTTCTAAAAGCAAATACAAGTACTAATGAAGGTATCTGATTGGTGCAGACACATTGAAGGGGATCATGGTGGATCATCTAATTCTTTAACACCATATGCTCCGTCTGCTAAACATTCGACATTAAAATATGAAAGATTAATCTTCATGAATGCAGACGCTCATTTGTAAACTCCTCAGACTGTTATGTGAATGACTGACCCTGCCAGACTACTGTAATAAACATCATCCAGTGCTGTGATTTAGAGTTGTTATCACCTAATGACTTATAGGAGATCTCCACCTTATAGGAGATCTCCACCTTATAGGAGATCTCCACCTGCAAACCTCTATGATGTGCTTTGGATTTTGTCTTTGGTGCTATTTCACCCGTTTGGATTTGACAGTACTCTGATTTCTCTGAAGTTATTGGAAGTTAAATGTTACTTCTTTCGCAAACTGGATACAAAAGATCTGTGATTTTTGCTTCTgtgatgtttttcttttgttttgttctgtctgtagatgttttttcatgttttgaaataaagtagtttata
>TCONS_00053319
CTCATGCACAATCACATTCATCTACCCGTCCGTGCGGAGTGGTGCACACTTCTGCACAGATTGAGCTTTCTCTGTTATCTGAACTAAACAATAAAGTGTTGGGTGTACGTGTGTGTGCTGTCAGTTTCTTTCGTGTGTGTGGCCTGAAAACAACTGTAAACATGCCCAAAAGAGCCAAGAAGAACGAGGAAGGTGTTGATGGAGAGTCTGACAATGGAACTGCAGctgcaaagaaagagaaaaaggggAAAGAGCCCGAGGCCCCCATTCTATATGAAGATCCTCCAGAAAAGCTGACCAGTAAGGACGGCCGGGCAGCCAATATGAAGATCACCTCCTGGAATGTGGACGGCCTGCGGGCGTGGGTCAAAAAGAACGGACTTGATTGGGTGCGGAAGGAGGATCCAGACATCCTGTGTCTGCAGGAAACCAAGTGTGCTGAGAAAGCTCTGCCGGCGGACATCACTGGCATGCCAGAGTATCCACACAAATACTGGGCAGGATCAGAGGATAAGGAGGGCTACAGTGGAGTGGCCATGCTCTGCAAGACCGAACCACTCAATGTCACCTATGGCATTGGTAAAGAGGAGCACGATAAAGAGGGCCGGGTCATCACTGCCGAGTTTCCTGATTTCTTCCTGGTCACGGCGTACGTGCCTAATGCCAGTCGTGGTTTAGTGCGGCTTGACTACCGCAAGACTTGGGATGTGGATTTCCGAGCCTACCTGTGCGGTTTAGACGCGCGCAAACCCCTGGTGCTGTGTGGAGATCTGAACGTGGCCCACCAGGAGATCGATCTGAAAAACCCCAAGGGAAACCGCAAGAACGCGGGCTTCACCCCTGAGGAACGGGAGGGCTTCACACAGCTCCTGGAGGCCGGCTTTACTGATAGTTTTCGGGAGCTCTATCCAGATCAGGCCTACGCCTACACCTTCTGGACCTACATGATGAACGCTCGCTCCAAAAACGTGGGTTGGCGTTTGGACTACTTTGTGCTGTCGTCTGCTTTGCTGCCGGGTTTGTGCGACAGCAAGATCCGAAACACTGCCATGGGAAGTGATCACTGTCCTATTACCTTGTTTTTGGCAGTGTAGGTCAGGGTTTTTGTTGTCAGGGCTATGAATATATTTAGTTCCTTTAAAAGAGTCCCTGGTTCACTTCTttcatatatagacacacacacataaatatcgAGCTCTGCTAGTCTTAGAGTTGCATTTCCTTTCTTATAAAAGCAAACACAAGTACTAATGTAGGTATCTGATTGGTGCAGACACATTGAAGAGGATCACGGTGGATTGATAAATCGTTTTATACCATATGCACACTAtgctaaacattaaaaatatgtaataaatctTCATAAATGCAGGctcttgtctcttttttttttttttgtaaaattacaaaaaaaaggtattttacaagaaaataaaaGGCCCACGAACATTCAGTTCCTTTAAAAGAGTCCCTGGATCACATTTTACTTCatgcatagacacacacacacacacaaaaacacacacagaaaatttAACTCTATTAGTCATTACTCTTCTAAAAGCAAATACAAGTACTAATGAAGGTATCTGATTGGTGCAGACACATTGAAGGGGATCATGGTGGATCATCTAATTCTTTAACACCATATGCTCCGTCTGCTAAACATTCGACATTAAAATATGAAAGATTAATCTTCATGAATGCAGACGCTCATTTGTAAACTCCTCAGACTGTTATGTGAATGACTGACCCTGCCAGACTACTGTAATAAACATCATCCAGTGCTGTGATTTAGAGTTGTTATCACCTAATGACTTATAGGAGATCTCCACCTTATAGGAGATCTCCACCTTATAGGAGATCTCCACCTGCAAACCTCTATGATGTGCTTTGGATTTTGTCTTTGGTGCTATTTCACCCGTTTGGATTTGACAGTACTCTGATTTCTCTGAAGTTATTGGAAGTTAAATGTTACTTCTTTCGCAAACTGGATACAAAAGATCTGTGATTTTTGCTTCTgtgatgtttttcttttgttttgttctgtctgtagatgttttttcatgttttgaaataaagtagtttatataaaaaaaggaaattgtctgtattttta
>TCONS_00053320
TCTACCCGTCCGTGCGGAGTGGTGCACACTTCTGCACAGATTGAGCTTTCTCTGTTATCTGAACTAAACAATAAAGTGTTGGGTGTACGTGTGTGTGCTGTCAGTTTCTTTCGTGTGTGTGGCCTGAAAACAACTGTAAACATGCCCAAAAGAGCCAAGAAGAACGAGGAAGGTGTTGATGGAGAGTCTGACAATGGAACTGctgcaaagaaagagaaaaaggggAAAGAGCCCGAGGCCCCCATTCTATATGAAGATCCTCCAGAAAAGCTGACCAGTAAGGACGGCCGGGCAGCCAATATGAAGATCACCTCCTGGAATGTGGACGGCCTGCGGGCGTGGGTCAAAAAGAACGGACTTGATTGGGTGCGGAAGGAGGATCCAGACATCCTGTGTCTGCAGGAAACCAAGTGTGCTGAGAAAGCTCTGCCGGCGGACATCACTGGCATGCCAGAGTATCCACACAAATACTGGGCAGGATCAGAGGATAAGGAGGGCTACAGTGGAGTGGCCATGCTCTGCAAGACCGAACCACTCAATGTCACCTATGGCATTGGTAAAGAGGAGCACGATAAAGAGGGCCGGGTCATCACTGCCGAGTTTCCTGATTTCTTCCTGGTCACGGCGTACGTGCCTAATGCCAGTCGTGGTTTAGTGCGGCTTGACTACCGCAAGACTTGGGATGTGGATTTCCGAGCCTACCTGTGCG
>TCONS_00053321
GCACACTTCTGCACAGATTGAGCTTTCTCTGTTATCTGAACTAAACAATAAAGTGTTGGCATACTGCAAGCACATGCATTTTGCTTTATGCAGATCACGCACTTTATGTGTACGTGTGTGTGCTGTCAGTTTCTTTCGTGTGTGTGGCCTGAAAACAACTGTAAACATGCCCAAAAGAGCCAAGAAGAACGAGGAAGGTGTTGATGGAGAGTCTGACAATGGAACTGctgcaaagaaagagaaaaaggggAAAGAGCCCGAGGCCCCCATTCTATATGAAGATCCTCCAGAAAAGCTGACCAGTAAGGACGGCCGGGCAGCCAATATGAAGATCACCTCCTGGAATGTGGACGGCCTGCGGGCGTGGGTCAAAAAGAACGGACTTGAT
>TCONS_00053322
ACTTCTGCACAGATTGAGCTTTCTCTGTTATCTGAACTAAACAATAAAGTGTTGGCATACTGCAAGCACATGCATTTTGCTTTATGCAGATCACGCACTTTATGTGTACGTGTGTGTGCTGTCAGTTTCTTTCGTGTGTGTGGCCTGAAAACAACTGTAAACATGCCCAAAAGAGCCAAGAAGAACGAGGAAGGTGTTGATGGAGAGTCTGACAATGGAACTGCAGctgcaaagaaagagaaaaaggggAAAGAGCCCGAGGCCCCCATTCTATATGAAGATCCTCCAGAAAAGCTGACCAGTAAGGACGGCCGGGCAGCCAATATGAAGATCACCTCCTGGAATGTGGACGGCCTGCGGGCGTGGGTCAAAAAGAACGGACTTGATTGGGTGCGGAAGGAGGATCCAGACATCCTGTGTCTGCAGGAAACCAAGTGTGCTGAGAAAGCTCTGCCGGCGGACATCACTGGCATGCCAGAGTATCCACACAAATACTGGGCAGGATCAGAGGATAAGGAGGGCTACAGTGGAGTGGCCATGCTCTGCAAGACCGAACCACTCAATGTCACCTATGGCATT
>TCONS_00053323
GCTtcattgtttcattcattcaggcCGCACTTCTGGCTAACTCACACATTTGGCTAATTCATGCTCGCTCGTTATTCCAGCATACTGCAAGCACATGCATTTTGCTTTATGCAGATCACGCACTTTATGTGTACGTGTGTGTGCTGTCAGTTTCTTTCGTGTGTGTGGCCTGAAAACAACTGTAAACATGCCCAAAAGAGCCAAGAAGAACGAGGAAGGTGTTGATGGAGAGTCTGACAATGGAACTGCAGctgcaaagaaagagaaaaaggggAAAGAGCCCGAGGCCCCCATTCTATATGAAGATCCTCCAGAAAAGCTGACCAGTAAGGACGGCCGGGCAGCCAATATGAAGATCACCTCCTGGAATGTGGACGGCCTGCGGGCGTGGGTCAAAAAGAACGGACTTGATTGGGTGCGGAAGGAGGATCCAGACATCCTGTGTCTGCAGGAAACCAAGTGTGCTGAGAAAGCTCTGCCGGCGGACATCACTGGCATGCCAGAGTATCCACACAAATACTGGGCAGGATCAGAGGATAAGGAGGGCTACAGTGGAGTGGCCATGCTCTGCAAGACCGAACCACTCAATGTCACCTATGGCATTGGTAAAGAGGAGCACGATAAAGAGGGCCGGGTCATCACTGCCGAGTTTCCTGATTTCTTCCTGGTCACGGCGTACGTGCCTAATGCCAGTCGTGGTTTAGTGCGGCTTGACTACCGCAAGACTTGGGATGTGGATTTCCGAGCCTACCTG
>TCONS_00053324
GTGTACGTGTGTGTGCTGTCAGTTTCTTTCGTGTGTGTGGCCTGAAAACAACTGTAAACATGCCCAAAAGAGCCAAGAAGAACGAGGAAGGTGTTGATGGAGAGTCTGACAATGGAACTGCAGctgcaaagaaagagaaaaaggggAAAGAGCCCGAGGCCCCCATTCTATATGAAGATCCTCCAGAAAAGCTGACCAGTAAGGACGGCCGGGCAGCCAATATGAAGATCACCTCCTGGAATGTGGACGGCCTGCGGGCGTGGGTCAAAAAGAACGGACTTGATTGGGTGCGGAAGGAGGATCCAGACATCCTGTGTCTGCAGGAAACCAAGTGTGCTGAGAAAGCTCTGCCGGCGGACATCACTGGCATGCCAGAGTATCCACACAAATACTGGGCAGGATCAGAGGATAAGGAGGGCTACAGTGGAGTGGCCATGCTCTGCAAGACCGAACCACTCAATGTCACCTATGGCATTGGTAAAGAGGAGCACGATAAAGAGGGCCGGGTCATCACTGCCGAGTTTCCTGATTTCTTCCTGGTCACGGCGTACGTGCCTAATGCCAGTCGTGGTTTAGTGCGGCTTGACTACCGCAAGACTTGGGATGTGGATTTCCGAGCCTACCTGTGCGGTTTAGACGCGCGCAAACCCCTGGTGCTGTGTGGAGATCTGAACGTGGCCCACCAGGAGATCGATCTGAAAAACCCCAAGGGAAACCGCAAGAACGCGGGCTTCACCCCTGAGGAACGGGAGGGCTTCACACAGCTCCTGGAGGCCGGCTTTACTGATAGTTTTCGGGAGCTCTATCCAGATCAGGCCTACGCCTACACCTTCTGGACCTACATGATGAACGCTCGCTCCAAAAACGTGGGTTGGCGTTTGGACTACTTTGTGCTGTCGTCTGCTTTGCTGCCGGGTTTGTGCGACAGCAAGATCCGAAACACTGCCATGGGAAGTGATCACTGTCCTATTACCTTGTTTTTGGCAGTGTAGGTCAGGGTTTTTGTTGTCAGGGCTATGAATATATTTAGTTCCTTTAAAAGAGTCCCTGGTTCACTTCTttcatatatagacacacacacataaatatcgAGCTCTGCTAGTCTTAGAGTTGCATTTCCTTTCTTATAAAAGCAAACACAAGTACTAATGTAGGTATCTGATTGGTGCAGACACATTGAAGAGGATCACGGTGGATTGATAAATCGTTTTATACCATATGCACACTAtgctaaacattaaaaatatgtaataaatctTCATAAATGCAGGctcttgtctcttttttttttttttgtaaaattacaaaaaaaaggtattttacaagaaaataaaaGGCCCACGAACATTCAGTTCCTTTAAAAGAGTCCCTGGATCACATTTTACTTCatgcatagacacacacacacacacaaaaacacacacagaaaatttAACTCTATTAGTCATTACTCTTCTAAAAGCAAATACAAGTACTAATGAAGGTATCTGATTGGTGCAGACACATTGAAGGGGATCATGGTGGATCATCTAATTCTTTAACACCATATGCTCCGTCTGCTAAACATTCGACATTAAAATATGAAAGATTAATCTTCATGAATGCAGACGCTCATTTGTAAACTCCTCAGACTGTTATGTGAATGACTGACCCTGCCAGACTACTGTAATAAACATCATCCAGTGCTGTGATTTAGAGTTGTTATCACCTAATGACTTATAGGAGATCTCCACCTTATAGGAGATCTCCACCTTATAGGAGATCTCCACCTGCAAACCTCTATGATGTGCTTTGGATTTTGTCTTTGGTGCTATTTCACCCGTTTGGATTTGACAGTACTCTGATTTCTCTGAAGTTATTGGAAGTTAAATGTTACTTCTTTCGCAAACTGGATACAAAAGATCTGTGATTTTTGCTTCTgtgatgtttttcttttgttttgttctgtctgtagatgttttttcatgttttgaaataaagtagtttatataaaaaaaggaaattgtctgtatttttattttatatttatattaaaattagaacatttaatcatataaaatgtgtatgtatgtttttcaTGTATGAATTGAATGCATTAACTGTGCATGTTGTTAGAATTTAGTTTAGAAAATATATAGTCATTAGTTAAAAATGTTACTATAACATCTGAAATTGCTAttgctttttaatatatttaaaatgtgtatagtgaagtttatttattaactaatttcgagaggataatgtgcttatgattgcttgcagccgatCCCTCTTCATGCAATCTATGATTCACCAACCAGATGGtttctaagccactataaataccctaagctccatgtaacagccatcttcattatAAAGAATCCagcccttccacccctactcctccttctttcctagatgggtggcactgtggcccagtggttagcagtgttgcctcacagcaagaacgtcaaaggttctagtccttaccaagccagctgatgttTCAGTGCTGAGTTTACATgctctccccgtgctcatgtgggttccccggtttcctcccactatccaaaaacatgcgacttaagttaattgactaatccgaatcggcaccatagacatgctcctagcaATCACTATATGTTCATTAGcttctacagcaggggagttctcaagatctacctgagctcaaactcccctctcgc
>TCONS_00053325
AGATCCTCCAGAAAAGCTGACCAGTAAGGACGGCCGGGCAGCCAATATGAAGATCACCTCCTGGAATGTGGACGGCCTGCGGGCGTGGGTCAAAAAGAACGGACTTGATTGGGTGCGGAAGGAGGATCCAGACATCCTGTGTCTGCAGGAAACCAAGTGTGCTGAGAAAGCTCTGCCGGCGGACATCACTGGCATGCCAGAGTATCCACACAAATACTGGGCAGGATCAGAGGATAAGGAGGGCTACAGTGGAGTGGCCATGCTCTGCAAGACCGAACCACTCAATGTCACCTATGGCATTGGTAAGAGTAACCATGCATGCTTATGTATTCTCCAAACTGAGTTATAATGCACTTAAACtaggtcctgaagggccggtgtccagcatattttagttccaaccccaattaaacacaccaggACCAGCTAACCAagcattttcaaggtatactagGAAGTGtgtgaaggaagttggagctaaactatgcaggaaaccgaccctccaggaccagtttggacacccctgacttacagCAAGCAGCTTTATctttcattaaagggatagttcacccaaaacttaaaaacgtcagtcatcatttactttaaAAACCTCCGTACGTTTCTAGGTAAAGAGGAGCACGATAAAGAGGGCCGGGTCATCACTGCCGAGTTTCCTGATTTC

Function

symbol description
apex1 Predicted to enable DNA-(apurinic or apyrimidinic site) endonuclease activity; double-stranded DNA 3'-5' exodeoxyribonuclease activity; and phosphodiesterase I activity. Acts upstream of or within several processes, including heart contraction; heart looping; and negative regulation of apoptotic process. Predicted to be located in endoplasmic reticulum; mitochondrion; and nuclear lumen. Predicted to be active in nucleus. Is expressed in head. Human ortholog(s) of this gene implicated in breast cancer; female reproductive organ cancer (multiple); spina bifida; and urinary bladder cancer. Orthologous to human APEX1 (apurinic/apyrimidinic endodeoxyribonuclease 1).

GO:

id name namespace
GO:0010628 positive regulation of gene expression biological_process
GO:0080111 DNA demethylation biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0001947 heart looping biological_process
GO:0060047 heart contraction biological_process
GO:0006281 DNA repair biological_process
GO:0006284 base-excision repair biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005634 nucleus cellular_component
GO:0016607 nuclear speck cellular_component
GO:0005730 nucleolus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component
GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity molecular_function
GO:0004518 nuclease activity molecular_function
GO:0004519 endonuclease activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004528 phosphodiesterase I activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0016829 lyase activity molecular_function
GO:0140078 class I DNA-(apurinic or apyrimidinic site) endonuclease activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0008311 double-stranded DNA 3'-5' exodeoxyribonuclease activity molecular_function

KEGG:

id description
ko03410 Base excision repair
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-040426-2761 Predicted to enable DNA-(apurinic or apyrimidinic site) endonuclease activity; double-stranded DNA 3'-5' exodeoxyribonuclease activity; and phosphodiesterase I activity. Acts upstream of or within several processes, including heart contraction; heart looping; and negative regulation of apoptotic process. Predicted to be located in endoplasmic reticulum; mitochondrion; and nuclear lumen. Predicted to be active in nucleus. Is expressed in head. Human ortholog(s) of this gene implicated in breast cancer; female reproductive organ cancer (multiple); spina bifida; and urinary bladder cancer. Orthologous to human APEX1 (apurinic/apyrimidinic endodeoxyribonuclease 1).

Ensembl:

ensembl_id ENSDARG00000045843

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053318 False 2136 mRNA 0.44 6 5333988 5339829
TCONS_00053317 False 2139 mRNA 0.44 6 5333988 5339829
TCONS_00053319 False 2119 mRNA 0.44 5 5333988 5339857
TCONS_00053320 False 709 mRNA 0.52 5 5334008 5338470
TCONS_00053321 False 388 mRNA 0.47 4 5334031 5334815
TCONS_00053322 False 579 mRNA 0.49 5 5334035 5337992
TCONS_00053323 False 754 mRNA 0.51 5 5334202 5338466
TCONS_00053324 False 2690 mRNA 0.42 4 5334439 5340530
TCONS_00053325 True 682 mRNA 0.48 2 5334707 5338373

Neighbor

gene id symbol gene type direction distance location
XLOC_027047 si:ch211-214j24.10 coding upstream 8652 5317483 ~ 5325336 (+)
XLOC_027046 NA coding upstream 29316 5302949 ~ 5304672 (+)
XLOC_027045 ccdc167 coding upstream 60150 5255041 ~ 5273838 (+)
XLOC_027044 si:ch211-214j24.14 coding upstream 80015 5249494 ~ 5253973 (+)
XLOC_027043 galnt8b.2 coding upstream 110818 5215950 ~ 5223170 (+)
XLOC_027049 zgc:113263 coding downstream 1062 5341592 ~ 5368158 (+)
XLOC_027050 selenoo2 coding downstream 37808 5378338 ~ 5387478 (+)
XLOC_027051 si:dkey-14d8.20 coding downstream 51564 5392094 ~ 5494298 (+)
XLOC_027052 BX324164.1 coding downstream 80376 5420906 ~ 5456058 (+)
XLOC_027053 NA coding downstream 84330 5424860 ~ 5456948 (+)
XLOC_027036 NA non-coding upstream 367438 4963839 ~ 4966550 (+)
XLOC_027035 NA non-coding upstream 371366 4938766 ~ 4962622 (+)
XLOC_027034 NA non-coding upstream 407927 4832804 ~ 4926061 (+)
XLOC_027032 NA non-coding upstream 618827 4711163 ~ 4715161 (+)
XLOC_027054 NA non-coding downstream 105239 5445769 ~ 5447230 (+)
XLOC_027063 CU571169.1 non-coding downstream 484838 5825368 ~ 5826340 (+)
XLOC_027069 NA non-coding downstream 616873 5957403 ~ 5963871 (+)

Expression


Co-expression Network