XLOC_027048 (apex1)


Basic Information

Item Value
gene id XLOC_027048
gene name apex1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 5333988 ~ 5340530 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053318
CTCATGCACAATCACATTCATCTACCCGTCCGTGCGGAGTGGTGCACACTTCTGCACAGATTGAGCTTTCTCTGTTATCTGAACTAAACAATAAAGTGTTGGCATACTGCAAGCACATGCATTTTGCTTTATGCAGATCACGCACTTTATGTGTACGTGTGTGTGCTGTCAGTTTCTTTCGTGTGTGTGGCCTGAAAACAACTGTAAACATGCCCAAAAGAGCCAAGAAGAACGAGGAAGGTGTTGATGGAGAGTCTGACAATGGAACTGctgcaaagaaagagaaaaaggggAAAGAGCCCGAGGCCCCCATTCTATATGAAGATCCTCCAGAAAAGCTGACCAGTAAGGACGGCCGGGCAGCCAATATGAAGATCACCTCCTGGAATGTGGACGGCCTGCGGGCGTGGGTCAAAAAGAACGGACTTGATTGGGTGCGGAAGGAGGATCCAGACATCCTGTGTCTGCAGGAAACCAAGTGTGCTGAGAAAGCTCTGCCGGCGGACATCACTGGCATGCCAGAGTATCCACACAAATACTGGGCAGGATCAGAGGATAAGGAGGGCTACAGTGGAGTGGCCATGCTCTGCAAGACCGAACCACTCAATGTCACCTATGGCATTGGTAAAGAGGAGCACGATAAAGAGGGCCGGGTCATCACTGCCGAGTTTCCTGATTTCTTCCTGGTCACGGCGTACGTGCCTAATGCCAGTCGTGGTTTAGTGCGGCTTGACTACCGCAAGACTTGGGATGTGGATTTCCGAGCCTACCTGTGCGGTTTAGACGCGCGCAAACCCCTGGTGCTGTGTGGAGATCTGAACGTGGCCCACCAGGAGATCGATCTGAAAAACCCCAAGGGAAACCGCAAGAACGCGGGCTTCACCCCTGAGGAACGGGAGGGCTTCACACAGCTCCTGGAGGCCGGCTTTACTGATAGTTTTCGGGAGCTCTATCCAGATCAGGCCTACGCCTACACCTTCTGGACCTACATGATGAACGCTCGCTCCAAAAACGTGGGTTGGCGTTTGGACTACTTTGTGCTGTCGTCTGCTTTGCTGCCGGGTTTGTGCGACAGCAAGATCCGAAACACTGCCATGGGAAGTGATCACTGTCCTATTACCTTGTTTTTGGCAGTGTAGGTCAGGGTTTTTGTTGTCAGGGCTATGAATATATTTAGTTCCTTTAAAAGAGTCCCTGGTTCACTTCTttcatatatagacacacacacataaatatcgAGCTCTGCTAGTCTTAGAGTTGCATTTCCTTTCTTATAAAAGCAAACACAAGTACTAATGTAGGTATCTGATTGGTGCAGACACATTGAAGAGGATCACGGTGGATTGATAAATCGTTTTATACCATATGCACACTAtgctaaacattaaaaatatgtaataaatctTCATAAATGCAGGctcttgtctcttttttttttttttgtaaaattacaaaaaaaaggtattttacaagaaaataaaaGGCCCACGAACATTCAGTTCCTTTAAAAGAGTCCCTGGATCACATTTTACTTCatgcatagacacacacacacacacaaaaacacacacagaaaatttAACTCTATTAGTCATTACTCTTCTAAAAGCAAATACAAGTACTAATGAAGGTATCTGATTGGTGCAGACACATTGAAGGGGATCATGGTGGATCATCTAATTCTTTAACACCATATGCTCCGTCTGCTAAACATTCGACATTAAAATATGAAAGATTAATCTTCATGAATGCAGACGCTCATTTGTAAACTCCTCAGACTGTTATGTGAATGACTGACCCTGCCAGACTACTGTAATAAACATCATCCAGTGCTGTGATTTAGAGTTGTTATCACCTAATGACTTATAGGAGATCTCCACCTTATAGGAGATCTCCACCTTATAGGAGATCTCCACCTGCAAACCTCTATGATGTGCTTTGGATTTTGTCTTTGGTGCTATTTCACCCGTTTGGATTTGACAGTACTCTGATTTCTCTGAAGTTATTGGAAGTTAAATGTTACTTCTTTCGCAAACTGGATACAAAAGATCTGTGATTTTTGCTTCTgtgatgtttttcttttgttttgttctgtctgtagatgttttttcatgttttgaaataaagtagtttata
>TCONS_00053317
CTCATGCACAATCACATTCATCTACCCGTCCGTGCGGAGTGGTGCACACTTCTGCACAGATTGAGCTTTCTCTGTTATCTGAACTAAACAATAAAGTGTTGGCATACTGCAAGCACATGCATTTTGCTTTATGCAGATCACGCACTTTATGTGTACGTGTGTGTGCTGTCAGTTTCTTTCGTGTGTGTGGCCTGAAAACAACTGTAAACATGCCCAAAAGAGCCAAGAAGAACGAGGAAGGTGTTGATGGAGAGTCTGACAATGGAACTGCAGctgcaaagaaagagaaaaaggggAAAGAGCCCGAGGCCCCCATTCTATATGAAGATCCTCCAGAAAAGCTGACCAGTAAGGACGGCCGGGCAGCCAATATGAAGATCACCTCCTGGAATGTGGACGGCCTGCGGGCGTGGGTCAAAAAGAACGGACTTGATTGGGTGCGGAAGGAGGATCCAGACATCCTGTGTCTGCAGGAAACCAAGTGTGCTGAGAAAGCTCTGCCGGCGGACATCACTGGCATGCCAGAGTATCCACACAAATACTGGGCAGGATCAGAGGATAAGGAGGGCTACAGTGGAGTGGCCATGCTCTGCAAGACCGAACCACTCAATGTCACCTATGGCATTGGTAAAGAGGAGCACGATAAAGAGGGCCGGGTCATCACTGCCGAGTTTCCTGATTTCTTCCTGGTCACGGCGTACGTGCCTAATGCCAGTCGTGGTTTAGTGCGGCTTGACTACCGCAAGACTTGGGATGTGGATTTCCGAGCCTACCTGTGCGGTTTAGACGCGCGCAAACCCCTGGTGCTGTGTGGAGATCTGAACGTGGCCCACCAGGAGATCGATCTGAAAAACCCCAAGGGAAACCGCAAGAACGCGGGCTTCACCCCTGAGGAACGGGAGGGCTTCACACAGCTCCTGGAGGCCGGCTTTACTGATAGTTTTCGGGAGCTCTATCCAGATCAGGCCTACGCCTACACCTTCTGGACCTACATGATGAACGCTCGCTCCAAAAACGTGGGTTGGCGTTTGGACTACTTTGTGCTGTCGTCTGCTTTGCTGCCGGGTTTGTGCGACAGCAAGATCCGAAACACTGCCATGGGAAGTGATCACTGTCCTATTACCTTGTTTTTGGCAGTGTAGGTCAGGGTTTTTGTTGTCAGGGCTATGAATATATTTAGTTCCTTTAAAAGAGTCCCTGGTTCACTTCTttcatatatagacacacacacataaatatcgAGCTCTGCTAGTCTTAGAGTTGCATTTCCTTTCTTATAAAAGCAAACACAAGTACTAATGTAGGTATCTGATTGGTGCAGACACATTGAAGAGGATCACGGTGGATTGATAAATCGTTTTATACCATATGCACACTAtgctaaacattaaaaatatgtaataaatctTCATAAATGCAGGctcttgtctcttttttttttttttgtaaaattacaaaaaaaaggtattttacaagaaaataaaaGGCCCACGAACATTCAGTTCCTTTAAAAGAGTCCCTGGATCACATTTTACTTCatgcatagacacacacacacacacaaaaacacacacagaaaatttAACTCTATTAGTCATTACTCTTCTAAAAGCAAATACAAGTACTAATGAAGGTATCTGATTGGTGCAGACACATTGAAGGGGATCATGGTGGATCATCTAATTCTTTAACACCATATGCTCCGTCTGCTAAACATTCGACATTAAAATATGAAAGATTAATCTTCATGAATGCAGACGCTCATTTGTAAACTCCTCAGACTGTTATGTGAATGACTGACCCTGCCAGACTACTGTAATAAACATCATCCAGTGCTGTGATTTAGAGTTGTTATCACCTAATGACTTATAGGAGATCTCCACCTTATAGGAGATCTCCACCTTATAGGAGATCTCCACCTGCAAACCTCTATGATGTGCTTTGGATTTTGTCTTTGGTGCTATTTCACCCGTTTGGATTTGACAGTACTCTGATTTCTCTGAAGTTATTGGAAGTTAAATGTTACTTCTTTCGCAAACTGGATACAAAAGATCTGTGATTTTTGCTTCTgtgatgtttttcttttgttttgttctgtctgtagatgttttttcatgttttgaaataaagtagtttata
>TCONS_00053319
CTCATGCACAATCACATTCATCTACCCGTCCGTGCGGAGTGGTGCACACTTCTGCACAGATTGAGCTTTCTCTGTTATCTGAACTAAACAATAAAGTGTTGGGTGTACGTGTGTGTGCTGTCAGTTTCTTTCGTGTGTGTGGCCTGAAAACAACTGTAAACATGCCCAAAAGAGCCAAGAAGAACGAGGAAGGTGTTGATGGAGAGTCTGACAATGGAACTGCAGctgcaaagaaagagaaaaaggggAAAGAGCCCGAGGCCCCCATTCTATATGAAGATCCTCCAGAAAAGCTGACCAGTAAGGACGGCCGGGCAGCCAATATGAAGATCACCTCCTGGAATGTGGACGGCCTGCGGGCGTGGGTCAAAAAGAACGGACTTGATTGGGTGCGGAAGGAGGATCCAGACATCCTGTGTCTGCAGGAAACCAAGTGTGCTGAGAAAGCTCTGCCGGCGGACATCACTGGCATGCCAGAGTATCCACACAAATACTGGGCAGGATCAGAGGATAAGGAGGGCTACAGTGGAGTGGCCATGCTCTGCAAGACCGAACCACTCAATGTCACCTATGGCATTGGTAAAGAGGAGCACGATAAAGAGGGCCGGGTCATCACTGCCGAGTTTCCTGATTTCTTCCTGGTCACGGCGTACGTGCCTAATGCCAGTCGTGGTTTAGTGCGGCTTGACTACCGCAAGACTTGGGATGTGGATTTCCGAGCCTACCTGTGCGGTTTAGACGCGCGCAAACCCCTGGTGCTGTGTGGAGATCTGAACGTGGCCCACCAGGAGATCGATCTGAAAAACCCCAAGGGAAACCGCAAGAACGCGGGCTTCACCCCTGAGGAACGGGAGGGCTTCACACAGCTCCTGGAGGCCGGCTTTACTGATAGTTTTCGGGAGCTCTATCCAGATCAGGCCTACGCCTACACCTTCTGGACCTACATGATGAACGCTCGCTCCAAAAACGTGGGTTGGCGTTTGGACTACTTTGTGCTGTCGTCTGCTTTGCTGCCGGGTTTGTGCGACAGCAAGATCCGAAACACTGCCATGGGAAGTGATCACTGTCCTATTACCTTGTTTTTGGCAGTGTAGGTCAGGGTTTTTGTTGTCAGGGCTATGAATATATTTAGTTCCTTTAAAAGAGTCCCTGGTTCACTTCTttcatatatagacacacacacataaatatcgAGCTCTGCTAGTCTTAGAGTTGCATTTCCTTTCTTATAAAAGCAAACACAAGTACTAATGTAGGTATCTGATTGGTGCAGACACATTGAAGAGGATCACGGTGGATTGATAAATCGTTTTATACCATATGCACACTAtgctaaacattaaaaatatgtaataaatctTCATAAATGCAGGctcttgtctcttttttttttttttgtaaaattacaaaaaaaaggtattttacaagaaaataaaaGGCCCACGAACATTCAGTTCCTTTAAAAGAGTCCCTGGATCACATTTTACTTCatgcatagacacacacacacacacaaaaacacacacagaaaatttAACTCTATTAGTCATTACTCTTCTAAAAGCAAATACAAGTACTAATGAAGGTATCTGATTGGTGCAGACACATTGAAGGGGATCATGGTGGATCATCTAATTCTTTAACACCATATGCTCCGTCTGCTAAACATTCGACATTAAAATATGAAAGATTAATCTTCATGAATGCAGACGCTCATTTGTAAACTCCTCAGACTGTTATGTGAATGACTGACCCTGCCAGACTACTGTAATAAACATCATCCAGTGCTGTGATTTAGAGTTGTTATCACCTAATGACTTATAGGAGATCTCCACCTTATAGGAGATCTCCACCTTATAGGAGATCTCCACCTGCAAACCTCTATGATGTGCTTTGGATTTTGTCTTTGGTGCTATTTCACCCGTTTGGATTTGACAGTACTCTGATTTCTCTGAAGTTATTGGAAGTTAAATGTTACTTCTTTCGCAAACTGGATACAAAAGATCTGTGATTTTTGCTTCTgtgatgtttttcttttgttttgttctgtctgtagatgttttttcatgttttgaaataaagtagtttatataaaaaaaggaaattgtctgtattttta
>TCONS_00053320
TCTACCCGTCCGTGCGGAGTGGTGCACACTTCTGCACAGATTGAGCTTTCTCTGTTATCTGAACTAAACAATAAAGTGTTGGGTGTACGTGTGTGTGCTGTCAGTTTCTTTCGTGTGTGTGGCCTGAAAACAACTGTAAACATGCCCAAAAGAGCCAAGAAGAACGAGGAAGGTGTTGATGGAGAGTCTGACAATGGAACTGctgcaaagaaagagaaaaaggggAAAGAGCCCGAGGCCCCCATTCTATATGAAGATCCTCCAGAAAAGCTGACCAGTAAGGACGGCCGGGCAGCCAATATGAAGATCACCTCCTGGAATGTGGACGGCCTGCGGGCGTGGGTCAAAAAGAACGGACTTGATTGGGTGCGGAAGGAGGATCCAGACATCCTGTGTCTGCAGGAAACCAAGTGTGCTGAGAAAGCTCTGCCGGCGGACATCACTGGCATGCCAGAGTATCCACACAAATACTGGGCAGGATCAGAGGATAAGGAGGGCTACAGTGGAGTGGCCATGCTCTGCAAGACCGAACCACTCAATGTCACCTATGGCATTGGTAAAGAGGAGCACGATAAAGAGGGCCGGGTCATCACTGCCGAGTTTCCTGATTTCTTCCTGGTCACGGCGTACGTGCCTAATGCCAGTCGTGGTTTAGTGCGGCTTGACTACCGCAAGACTTGGGATGTGGATTTCCGAGCCTACCTGTGCG
>TCONS_00053321
GCACACTTCTGCACAGATTGAGCTTTCTCTGTTATCTGAACTAAACAATAAAGTGTTGGCATACTGCAAGCACATGCATTTTGCTTTATGCAGATCACGCACTTTATGTGTACGTGTGTGTGCTGTCAGTTTCTTTCGTGTGTGTGGCCTGAAAACAACTGTAAACATGCCCAAAAGAGCCAAGAAGAACGAGGAAGGTGTTGATGGAGAGTCTGACAATGGAACTGctgcaaagaaagagaaaaaggggAAAGAGCCCGAGGCCCCCATTCTATATGAAGATCCTCCAGAAAAGCTGACCAGTAAGGACGGCCGGGCAGCCAATATGAAGATCACCTCCTGGAATGTGGACGGCCTGCGGGCGTGGGTCAAAAAGAACGGACTTGAT
>TCONS_00053322
ACTTCTGCACAGATTGAGCTTTCTCTGTTATCTGAACTAAACAATAAAGTGTTGGCATACTGCAAGCACATGCATTTTGCTTTATGCAGATCACGCACTTTATGTGTACGTGTGTGTGCTGTCAGTTTCTTTCGTGTGTGTGGCCTGAAAACAACTGTAAACATGCCCAAAAGAGCCAAGAAGAACGAGGAAGGTGTTGATGGAGAGTCTGACAATGGAACTGCAGctgcaaagaaagagaaaaaggggAAAGAGCCCGAGGCCCCCATTCTATATGAAGATCCTCCAGAAAAGCTGACCAGTAAGGACGGCCGGGCAGCCAATATGAAGATCACCTCCTGGAATGTGGACGGCCTGCGGGCGTGGGTCAAAAAGAACGGACTTGATTGGGTGCGGAAGGAGGATCCAGACATCCTGTGTCTGCAGGAAACCAAGTGTGCTGAGAAAGCTCTGCCGGCGGACATCACTGGCATGCCAGAGTATCCACACAAATACTGGGCAGGATCAGAGGATAAGGAGGGCTACAGTGGAGTGGCCATGCTCTGCAAGACCGAACCACTCAATGTCACCTATGGCATT
>TCONS_00053323
GCTtcattgtttcattcattcaggcCGCACTTCTGGCTAACTCACACATTTGGCTAATTCATGCTCGCTCGTTATTCCAGCATACTGCAAGCACATGCATTTTGCTTTATGCAGATCACGCACTTTATGTGTACGTGTGTGTGCTGTCAGTTTCTTTCGTGTGTGTGGCCTGAAAACAACTGTAAACATGCCCAAAAGAGCCAAGAAGAACGAGGAAGGTGTTGATGGAGAGTCTGACAATGGAACTGCAGctgcaaagaaagagaaaaaggggAAAGAGCCCGAGGCCCCCATTCTATATGAAGATCCTCCAGAAAAGCTGACCAGTAAGGACGGCCGGGCAGCCAATATGAAGATCACCTCCTGGAATGTGGACGGCCTGCGGGCGTGGGTCAAAAAGAACGGACTTGATTGGGTGCGGAAGGAGGATCCAGACATCCTGTGTCTGCAGGAAACCAAGTGTGCTGAGAAAGCTCTGCCGGCGGACATCACTGGCATGCCAGAGTATCCACACAAATACTGGGCAGGATCAGAGGATAAGGAGGGCTACAGTGGAGTGGCCATGCTCTGCAAGACCGAACCACTCAATGTCACCTATGGCATTGGTAAAGAGGAGCACGATAAAGAGGGCCGGGTCATCACTGCCGAGTTTCCTGATTTCTTCCTGGTCACGGCGTACGTGCCTAATGCCAGTCGTGGTTTAGTGCGGCTTGACTACCGCAAGACTTGGGATGTGGATTTCCGAGCCTACCTG
>TCONS_00053324
GTGTACGTGTGTGTGCTGTCAGTTTCTTTCGTGTGTGTGGCCTGAAAACAACTGTAAACATGCCCAAAAGAGCCAAGAAGAACGAGGAAGGTGTTGATGGAGAGTCTGACAATGGAACTGCAGctgcaaagaaagagaaaaaggggAAAGAGCCCGAGGCCCCCATTCTATATGAAGATCCTCCAGAAAAGCTGACCAGTAAGGACGGCCGGGCAGCCAATATGAAGATCACCTCCTGGAATGTGGACGGCCTGCGGGCGTGGGTCAAAAAGAACGGACTTGATTGGGTGCGGAAGGAGGATCCAGACATCCTGTGTCTGCAGGAAACCAAGTGTGCTGAGAAAGCTCTGCCGGCGGACATCACTGGCATGCCAGAGTATCCACACAAATACTGGGCAGGATCAGAGGATAAGGAGGGCTACAGTGGAGTGGCCATGCTCTGCAAGACCGAACCACTCAATGTCACCTATGGCATTGGTAAAGAGGAGCACGATAAAGAGGGCCGGGTCATCACTGCCGAGTTTCCTGATTTCTTCCTGGTCACGGCGTACGTGCCTAATGCCAGTCGTGGTTTAGTGCGGCTTGACTACCGCAAGACTTGGGATGTGGATTTCCGAGCCTACCTGTGCGGTTTAGACGCGCGCAAACCCCTGGTGCTGTGTGGAGATCTGAACGTGGCCCACCAGGAGATCGATCTGAAAAACCCCAAGGGAAACCGCAAGAACGCGGGCTTCACCCCTGAGGAACGGGAGGGCTTCACACAGCTCCTGGAGGCCGGCTTTACTGATAGTTTTCGGGAGCTCTATCCAGATCAGGCCTACGCCTACACCTTCTGGACCTACATGATGAACGCTCGCTCCAAAAACGTGGGTTGGCGTTTGGACTACTTTGTGCTGTCGTCTGCTTTGCTGCCGGGTTTGTGCGACAGCAAGATCCGAAACACTGCCATGGGAAGTGATCACTGTCCTATTACCTTGTTTTTGGCAGTGTAGGTCAGGGTTTTTGTTGTCAGGGCTATGAATATATTTAGTTCCTTTAAAAGAGTCCCTGGTTCACTTCTttcatatatagacacacacacataaatatcgAGCTCTGCTAGTCTTAGAGTTGCATTTCCTTTCTTATAAAAGCAAACACAAGTACTAATGTAGGTATCTGATTGGTGCAGACACATTGAAGAGGATCACGGTGGATTGATAAATCGTTTTATACCATATGCACACTAtgctaaacattaaaaatatgtaataaatctTCATAAATGCAGGctcttgtctcttttttttttttttgtaaaattacaaaaaaaaggtattttacaagaaaataaaaGGCCCACGAACATTCAGTTCCTTTAAAAGAGTCCCTGGATCACATTTTACTTCatgcatagacacacacacacacacaaaaacacacacagaaaatttAACTCTATTAGTCATTACTCTTCTAAAAGCAAATACAAGTACTAATGAAGGTATCTGATTGGTGCAGACACATTGAAGGGGATCATGGTGGATCATCTAATTCTTTAACACCATATGCTCCGTCTGCTAAACATTCGACATTAAAATATGAAAGATTAATCTTCATGAATGCAGACGCTCATTTGTAAACTCCTCAGACTGTTATGTGAATGACTGACCCTGCCAGACTACTGTAATAAACATCATCCAGTGCTGTGATTTAGAGTTGTTATCACCTAATGACTTATAGGAGATCTCCACCTTATAGGAGATCTCCACCTTATAGGAGATCTCCACCTGCAAACCTCTATGATGTGCTTTGGATTTTGTCTTTGGTGCTATTTCACCCGTTTGGATTTGACAGTACTCTGATTTCTCTGAAGTTATTGGAAGTTAAATGTTACTTCTTTCGCAAACTGGATACAAAAGATCTGTGATTTTTGCTTCTgtgatgtttttcttttgttttgttctgtctgtagatgttttttcatgttttgaaataaagtagtttatataaaaaaaggaaattgtctgtatttttattttatatttatattaaaattagaacatttaatcatataaaatgtgtatgtatgtttttcaTGTATGAATTGAATGCATTAACTGTGCATGTTGTTAGAATTTAGTTTAGAAAATATATAGTCATTAGTTAAAAATGTTACTATAACATCTGAAATTGCTAttgctttttaatatatttaaaatgtgtatagtgaagtttatttattaactaatttcgagaggataatgtgcttatgattgcttgcagccgatCCCTCTTCATGCAATCTATGATTCACCAACCAGATGGtttctaagccactataaataccctaagctccatgtaacagccatcttcattatAAAGAATCCagcccttccacccctactcctccttctttcctagatgggtggcactgtggcccagtggttagcagtgttgcctcacagcaagaacgtcaaaggttctagtccttaccaagccagctgatgttTCAGTGCTGAGTTTACATgctctccccgtgctcatgtgggttccccggtttcctcccactatccaaaaacatgcgacttaagttaattgactaatccgaatcggcaccatagacatgctcctagcaATCACTATATGTTCATTAGcttctacagcaggggagttctcaagatctacctgagctcaaactcccctctcgc
>TCONS_00053325
AGATCCTCCAGAAAAGCTGACCAGTAAGGACGGCCGGGCAGCCAATATGAAGATCACCTCCTGGAATGTGGACGGCCTGCGGGCGTGGGTCAAAAAGAACGGACTTGATTGGGTGCGGAAGGAGGATCCAGACATCCTGTGTCTGCAGGAAACCAAGTGTGCTGAGAAAGCTCTGCCGGCGGACATCACTGGCATGCCAGAGTATCCACACAAATACTGGGCAGGATCAGAGGATAAGGAGGGCTACAGTGGAGTGGCCATGCTCTGCAAGACCGAACCACTCAATGTCACCTATGGCATTGGTAAGAGTAACCATGCATGCTTATGTATTCTCCAAACTGAGTTATAATGCACTTAAACtaggtcctgaagggccggtgtccagcatattttagttccaaccccaattaaacacaccaggACCAGCTAACCAagcattttcaaggtatactagGAAGTGtgtgaaggaagttggagctaaactatgcaggaaaccgaccctccaggaccagtttggacacccctgacttacagCAAGCAGCTTTATctttcattaaagggatagttcacccaaaacttaaaaacgtcagtcatcatttactttaaAAACCTCCGTACGTTTCTAGGTAAAGAGGAGCACGATAAAGAGGGCCGGGTCATCACTGCCGAGTTTCCTGATTTC

Function

symbol description
apex1 Predicted to enable DNA-(apurinic or apyrimidinic site) endonuclease activity; double-stranded DNA 3'-5' exodeoxyribonuclease activity; and phosphodiesterase I activity. Acts upstream of or within several processes, including heart contraction; heart looping; and negative regulation of apoptotic process. Predicted to be located in endoplasmic reticulum; mitochondrion; and nuclear lumen. Predicted to be active in nucleus. Is expressed in head. Human ortholog(s) of this gene implicated in breast cancer; female reproductive organ cancer (multiple); spina bifida; and urinary bladder cancer. Orthologous to human APEX1 (apurinic/apyrimidinic endodeoxyribonuclease 1).

GO:

id name namespace
GO:0010628 positive regulation of gene expression biological_process
GO:0080111 DNA demethylation biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0001947 heart looping biological_process
GO:0060047 heart contraction biological_process
GO:0006281 DNA repair biological_process
GO:0006284 base-excision repair biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005634 nucleus cellular_component
GO:0016607 nuclear speck cellular_component
GO:0005730 nucleolus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component
GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity molecular_function
GO:0004518 nuclease activity molecular_function
GO:0004519 endonuclease activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004528 phosphodiesterase I activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0016829 lyase activity molecular_function
GO:0140078 class I DNA-(apurinic or apyrimidinic site) endonuclease activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0008311 double-stranded DNA 3'-5' exodeoxyribonuclease activity molecular_function

KEGG:

id description
ko03410 Base excision repair
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-040426-2761 Predicted to enable DNA-(apurinic or apyrimidinic site) endonuclease activity; double-stranded DNA 3'-5' exodeoxyribonuclease activity; and phosphodiesterase I activity. Acts upstream of or within several processes, including heart contraction; heart looping; and negative regulation of apoptotic process. Predicted to be located in endoplasmic reticulum; mitochondrion; and nuclear lumen. Predicted to be active in nucleus. Is expressed in head. Human ortholog(s) of this gene implicated in breast cancer; female reproductive organ cancer (multiple); spina bifida; and urinary bladder cancer. Orthologous to human APEX1 (apurinic/apyrimidinic endodeoxyribonuclease 1).

Ensembl:

ensembl_id ENSDARG00000045843

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053318 False 2136 mRNA 0.44 6 5333988 5339829
TCONS_00053317 False 2139 mRNA 0.44 6 5333988 5339829
TCONS_00053319 False 2119 mRNA 0.44 5 5333988 5339857
TCONS_00053320 False 709 mRNA 0.52 5 5334008 5338470
TCONS_00053321 False 388 mRNA 0.47 4 5334031 5334815
TCONS_00053322 False 579 mRNA 0.49 5 5334035 5337992
TCONS_00053323 False 754 mRNA 0.51 5 5334202 5338466
TCONS_00053324 False 2690 mRNA 0.42 4 5334439 5340530
TCONS_00053325 True 682 mRNA 0.48 2 5334707 5338373
Loading

Neighbor

gene id symbol gene type direction distance location
XLOC_027047 si:ch211-214j24.10 coding upstream 8652 5317483 ~ 5325336 (+)
XLOC_027046 NA coding upstream 29316 5302949 ~ 5304672 (+)
XLOC_027045 ccdc167 coding upstream 60150 5255041 ~ 5273838 (+)
XLOC_027044 si:ch211-214j24.14 coding upstream 80015 5249494 ~ 5253973 (+)
XLOC_027043 galnt8b.2 coding upstream 110818 5215950 ~ 5223170 (+)
XLOC_027049 zgc:113263 coding downstream 1062 5341592 ~ 5368158 (+)
XLOC_027050 selenoo2 coding downstream 37808 5378338 ~ 5387478 (+)
XLOC_027051 si:dkey-14d8.20 coding downstream 51564 5392094 ~ 5494298 (+)
XLOC_027052 BX324164.1 coding downstream 80376 5420906 ~ 5456058 (+)
XLOC_027053 NA coding downstream 84330 5424860 ~ 5456948 (+)
XLOC_027036 NA non-coding upstream 367438 4963839 ~ 4966550 (+)
XLOC_027035 NA non-coding upstream 371366 4938766 ~ 4962622 (+)
XLOC_027034 NA non-coding upstream 407927 4832804 ~ 4926061 (+)
XLOC_027032 NA non-coding upstream 618827 4711163 ~ 4715161 (+)
XLOC_027054 NA non-coding downstream 105239 5445769 ~ 5447230 (+)
XLOC_027063 CU571169.1 non-coding downstream 484838 5825368 ~ 5826340 (+)
XLOC_027069 NA non-coding downstream 616873 5957403 ~ 5963871 (+)

Expression

Expression of XLOC_027048(apex1) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
End of interactive chart.

Expression of XLOC_027048(apex1) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
End of interactive chart.

Co-expression Network