G789754


Basic Information

Item Value
gene id G789754
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 28923955 ~ 28996300 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU899279
atataaaactgtatttttttgtgaagaatcaacaacaagtgggacacaatcatgaagtggaactgttacggtgagtgaatgaggacccaaaagcgaactaacttaaacagagcttctttaataaccaaacataggtaggctcagatagaccggcagattccgacaggacaggacaaggttacagcaaacatgacgacagtctggttcaggcatgaatgacacaaacaaacaagaatccgacaaggacaggagcagaaacagagagagatataggggcctaatcagagggaaaaagggaacaggtgggaaacggggtgaatgggtagttagaggagacaaggaacagctgggagaaagcgggggagaaaaggtaacctaacaacgaccagcagagggagacagggtgaagggaaaggacagagacaagacacaacatgacagtacatgacagtacccccccactcaccgagcgcctcctggcgcactcgaggaggaaacctggcggcaacggaggaaatcatcaatcagcgcacggtccagcacgtcccgagagggaacccaactcctctcctcaggaccgtacccctcccagtcaactaggtactgatgaccacggccccgaggacgcatgtccaagattttacggaccctgtagataggtgcgccctcgacaaggatgggggggggg

Function

NR:

description
lipoxygenase homology domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU899279 True 688 lncRNA 0.51 2 28923955 28996300

Neighbor

gene id symbol gene type direction distance location
LOC118966022 NA coding upstream 29897 28893048 ~ 28894058 (+)
LOC110531878 LOC106577495 coding upstream 260321 28553769 ~ 28663634 (+)
LOC110531876 LOC106577496 coding upstream 375579 28448262 ~ 28548376 (+)
LOC118966204 NA coding upstream 426683 28497217 ~ 28497272 (+)
LOC110531872 LOC106577502 coding upstream 583498 28331806 ~ 28340457 (+)
LOC110531882 LOC106577492 coding downstream 40155 29036455 ~ 29039588 (+)
rbpjb LOC106577485 coding downstream 251827 29248127 ~ 29342203 (+)
tbc1d19 tbc1d19 coding downstream 357816 29354116 ~ 29381669 (+)
stim2b LOC106577483 coding downstream 386792 29383092 ~ 29473789 (+)
LOC110531891 NA coding downstream 1286337 30282637 ~ 30288163 (+)
G789629 NA non-coding upstream 223058 28696693 ~ 28700897 (+)
G789485 NA non-coding upstream 253670 28667262 ~ 28670285 (+)
G789493 NA non-coding upstream 384808 28531813 ~ 28539147 (+)
G789481 NA non-coding upstream 476621 28447127 ~ 28447334 (+)
G789472 zcchc4 non-coding upstream 486405 28436588 ~ 28437550 (+)
G790159 NA non-coding downstream 2279 28998579 ~ 28998779 (+)
G790172 NA non-coding downstream 18866 29015166 ~ 29020160 (+)
G790176 NA non-coding downstream 29098 29025398 ~ 29025622 (+)
G790177 NA non-coding downstream 30411 29026711 ~ 29026960 (+)
G790181 NA non-coding downstream 36204 29032504 ~ 29032733 (+)
taf6l taf6l other upstream 1436432 27480038 ~ 27487523 (+)
G787022 LOC106577527 other upstream 1544291 27379332 ~ 27379664 (+)
G786496 LOC106577539 other upstream 2510423 26413112 ~ 26413532 (+)
G786218 NA other upstream 2965088 25874527 ~ 25958867 (+)
G785962 LOC105020693 other upstream 3181046 25712997 ~ 25742909 (+)
G793757 LOC107579696 other downstream 2599696 31595996 ~ 31596918 (+)
LOC110531915 LOC106595846 other downstream 2757035 31753182 ~ 31757502 (+)
zgc:112271 bola2 other downstream 3126382 32122682 ~ 32124851 (+)

Expression


Co-expression Network