G790120 (LOC106575828)


Basic Information

Item Value
gene id G790120
gene name LOC106575828
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 28935417 ~ 28939614 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU899684
catcatgcactttttcatgaactctccctcattaaagggccgggctgattttgcgatctctgctgccactatataactagcctttacagcagcctcgctttgtgatgtggcttttttaaacatattctgttgtgaaaccaaacttattttcatctcctctactttctggctcctttgagtcatgtccaggtccttgtatttgtcatggtgtttcgtttcatagtgtcgtctaatgttgtactccttacttacagccacTCTCTTATACA

Function

NR:

description
PREDICTED: general transcription factor II-I repeat domain-containing protein 2-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU899684 True 269 lncRNA 0.41 2 28935417 28939614

Neighbor

gene id symbol gene type direction distance location
LOC110531875 zcchc4 coding downstream 491796 28436541 ~ 28443621 (-)
LOC110531873 LOC106577501 coding downstream 503411 28342139 ~ 28432006 (-)
LOC110531871 LOC106577503 coding downstream 624810 28294175 ~ 28310607 (-)
camk2d1 LOC106577507 coding downstream 651957 28163668 ~ 28283460 (-)
LOC110531868 LOC106577509 coding downstream 1038579 27894036 ~ 27896838 (-)
LOC110531880 NA coding upstream 24830 28964444 ~ 28966956 (-)
LOC110531881 LOC106577491 coding upstream 102961 29042575 ~ 29045196 (-)
LOC110531883 LOC106577489 coding upstream 130433 29070047 ~ 29139723 (-)
LOC110531884 LOC106577488 coding upstream 200736 29140350 ~ 29174588 (-)
LOC110531887 LOC106577486 coding upstream 404767 29344381 ~ 29353599 (-)
G790037 NA non-coding downstream 111947 28822733 ~ 28823470 (-)
G789968 NA non-coding downstream 244739 28689369 ~ 28690678 (-)
G789967 NA non-coding downstream 246719 28686065 ~ 28688698 (-)
G789945 NA non-coding downstream 269359 28663451 ~ 28666058 (-)
G789862 NA non-coding downstream 397869 28536883 ~ 28537548 (-)
G790515 NA non-coding upstream 68364 29007978 ~ 29008204 (-)
G790525 NA non-coding upstream 86896 29026510 ~ 29026713 (-)
G790529 NA non-coding upstream 92832 29032446 ~ 29032737 (-)
G790509 LOC106577492 non-coding upstream 98606 29038220 ~ 29039574 (-)
G790536 NA non-coding upstream 111037 29050651 ~ 29050925 (-)
G789863 LOC100194703 other downstream 282946 28528820 ~ 28652471 (-)
G789228 LOC106577504 other downstream 788438 28145220 ~ 28146979 (-)
LOC100136672 sstr1b other downstream 1101153 27821574 ~ 27834414 (-)
G788495 NA other downstream 1371892 27563162 ~ 27563525 (-)
G790535 NA other upstream 109284 29048898 ~ 29049244 (-)
G790551 NA other upstream 129238 29068852 ~ 29069187 (-)
G790598 NA other upstream 191760 29131374 ~ 29149017 (-)
G792267 NA other upstream 1375696 30315310 ~ 30357964 (-)

Expression


Co-expression Network