G790918 (LOC100136012)


Basic Information

Item Value
gene id G790918
gene name LOC100136012
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 29592245 ~ 29592728 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU900528
ctgccatgtagttctgggctgatccctcaccttcctcatgatcattgatgccccacgaagtgagatcttgcatggagccccagaccgagggtgattgaccttcatcttgaacttcttccatttcctaataattgcgccaacagttgttgccttctcaccaagctgcttgcctattgtcctgtagcccatccgagccttgtgcaggtctacaattttatccatgatgtccttacacagctccctggtctgggcctttgtggagaggttggagtctgtttgattgagcgtgtggacaggtgtcttttatacaggtaacaagttcaaacagatgcagttaatacaggtaatgagtggagaacaggagggcttcttaaagaaaaacgaacaggtctgtgagagtaggaattcttactggttggtaggtgatcaaatacttatgtcatgcaataaaatacaaattaattacttaaaaatcatacaatgt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU900528 True 484 lncRNA 0.44 1 29592245 29592728

Neighbor

gene id symbol gene type direction distance location
stim2b LOC106577483 coding upstream 118456 29383092 ~ 29473789 (+)
tbc1d19 tbc1d19 coding upstream 210576 29354116 ~ 29381669 (+)
rbpjb LOC106577485 coding upstream 251892 29248127 ~ 29342203 (+)
LOC110531882 LOC106577492 coding upstream 552657 29036455 ~ 29039588 (+)
LOC118966022 NA coding upstream 698187 28893048 ~ 28894058 (+)
LOC110531891 NA coding downstream 689909 30282637 ~ 30288163 (+)
LOC110531892 LOC106577482 coding downstream 781643 30374371 ~ 30598347 (+)
LOC110531915 LOC106595846 coding downstream 2160454 31753182 ~ 31757502 (+)
LOC110531917 LOC106608522 coding downstream 2307332 31900060 ~ 31992396 (+)
LOC110531918 LOC106577443 coding downstream 2410138 32002866 ~ 32027214 (+)
G790913 NA non-coding upstream 2722 29589244 ~ 29589523 (+)
G790888 NA non-coding upstream 22168 29569847 ~ 29570077 (+)
G790493 NA non-coding upstream 48375 29543019 ~ 29543870 (+)
G790214 NA non-coding upstream 506369 29085649 ~ 29085876 (+)
G790932 NA non-coding downstream 8489 29601217 ~ 29601417 (+)
G790985 NA non-coding downstream 48885 29641613 ~ 29641894 (+)
G790999 NA non-coding downstream 59744 29652472 ~ 29652681 (+)
G791000 NA non-coding downstream 59958 29652686 ~ 29652907 (+)
G791007 NA non-coding downstream 64462 29657190 ~ 29657392 (+)
taf6l taf6l other upstream 2104722 27480038 ~ 27487523 (+)
G787022 LOC106577527 other upstream 2212581 27379332 ~ 27379664 (+)
G786496 LOC106577539 other upstream 3178713 26413112 ~ 26413532 (+)
G786218 NA other upstream 3633378 25874527 ~ 25958867 (+)
G793757 LOC107579696 other downstream 2003268 31595996 ~ 31596918 (+)
zgc:112271 bola2 other downstream 2529954 32122682 ~ 32124851 (+)
G794892 NA other downstream 2909119 32501847 ~ 32502355 (+)

Expression


Co-expression Network