XLOC_027053


Basic Information

Item Value
gene id XLOC_027053
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 5424860 ~ 5456948 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057590
GTAAGAGCTCATCATATCAGATCTCATCCATCACAGTTGATCTGGGTTCAAACCCCACTTCAGAAGATTGAGTCAacacaagtttatttttattcaattcttTATTGTGAAGTCACAGGTCAGCAGTCAAACATCAGTTCCAGCAGGTGTTCAGACAGGAGAGGCGAGAGGAGGATGCAGATGGCATGAAATTATTTTAATGCTCAcacttaaccccacccctaaccacacccctcacagtgacatcactagctcaaTTAGGTGGATTGTGTCTGAGACTGCAAGTCTGacatatgcagtctcagcttgcaaatcTAAGTGTGCATCCAGATAATATCATCTGTGGTAAGAGCGCTGCCCCACGGCTTCAGGGGTTGCTGGTATCGGTCCCAGCCAGAACTCTGCGATATGTGTGaatggtgagtgagtgtgaggcgcgcctgaagaaggggggataccagttcggtctccccctggagcttccggagccgtgtccagcaggggttatactttacagcctgaaagaaataaaatcaactgtaaaaaaaaatacacctcTGACCCTTCCACACCCGcttcggttaccatcatttactttctagaggagtgaccctccacaaagcaaatgatggtaaccgacatgtggaacaga
>TCONS_00057591
TCACAGGTCAGCAGTCCAACATCAGTTCCAGCAGGTGTTCAGACAGGAGAGGCGAGAGGAGGATGCAGATGGCATGAAATTATTTTAATGCTCAcacttaaccccacccctaaccacacccctcacagtgacatcactagctcaaTTAGGTGGATTGTGTCTGAGACTGCAAGTCTGacatatgcagtctcagcttgcaaatcTAAGTGTGCATCCAGATAATATCATCTGTGGTAAGAGCGCTGCCCCACGGCTTCAGGGGTTGCTGGTATCGGTCCCAGCCAGAACTCTGCGATATGTGTGaatggtgagtgagtgtgaggcgcgcctgaagaaggggggataccagttcggtctccccctggagcttccggagccgtgtccagcaggggttatactttacagcctgaaagaaataaaatcaactgtaaaaaaaaatacacctcTGACCCTTCCACACCCGcttcggttaccatcatttactttctagaggagtgaccctccacaaagcaaatgatggtaaccgacatgtggaacaga

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057590 False 652 lncRNA 0.47 2 5424860 5456948
TCONS_00057591 True 540 lncRNA 0.49 2 5424972 5456948

Neighbor

gene id symbol gene type direction distance location
XLOC_027050 selenoo2 coding upstream 37382 5378338 ~ 5387478 (+)
XLOC_027049 zgc:113263 coding upstream 56702 5341592 ~ 5368158 (+)
XLOC_027048 apex1 coding upstream 84330 5333988 ~ 5340530 (+)
XLOC_027047 si:ch211-214j24.10 coding upstream 99524 5317483 ~ 5325336 (+)
XLOC_027046 NA coding upstream 120188 5302949 ~ 5304672 (+)
XLOC_027055 mapk11 coding downstream 49998 5506946 ~ 5522437 (+)
XLOC_027056 mapk12b coding downstream 66742 5523690 ~ 5530441 (+)
XLOC_027057 si:dkey-14d8.6 coding downstream 74635 5531583 ~ 5533803 (+)
XLOC_027058 si:dkey-14d8.7 coding downstream 80153 5537101 ~ 5539842 (+)
XLOC_027059 mrps18a coding downstream 185748 5642696 ~ 5645166 (+)
XLOC_027036 NA non-coding upstream 458310 4963839 ~ 4966550 (+)
XLOC_027035 NA non-coding upstream 462238 4938766 ~ 4962622 (+)
XLOC_027034 NA non-coding upstream 498799 4832804 ~ 4926061 (+)
XLOC_027032 NA non-coding upstream 709699 4711163 ~ 4715161 (+)
XLOC_027063 CU571169.1 non-coding downstream 368420 5825368 ~ 5826340 (+)
XLOC_027069 NA non-coding downstream 500455 5957403 ~ 5963871 (+)
XLOC_027071 NA non-coding downstream 959330 6416278 ~ 6508633 (+)
XLOC_027075 NA non-coding downstream 1221482 6678430 ~ 6695024 (+)
XLOC_027078 CR388190.2 non-coding downstream 1446601 6903549 ~ 6904239 (+)

Expression


Co-expression Network