XLOC_027054


Basic Information

Item Value
gene id XLOC_027054
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 5445769 ~ 5447230 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057592
GAGATTTTCTGTCTTAGTGTAAGGCAGGGAGATCGGCCAGCGAACTCAATGCCAGTGTGAAGCCCTCCTGCTGCAGAACCACAAACTATCTCCACAGATCTTTGACCTGCGCTCAACAGCTGATGCTCCTCCACACACTCCTCCACATCCAGGCGGATTCACAGCTCCAGTAAAGGTATTTATGAGCTCATATTTCCAGTAGAGAGTCCagaaagtgtgtttgttgtgctgCTGCTCTGTCGCGTGTATGTTGGGGGAGGGACTTTCTGTAGAGAGCATGTGATTGGCCAGATTTGGTGTAGAGTCATCAGTACAGTATGAGGAGACTTTAGAGGTAAATGatgatatttacagtgtttaattgtgtttagtgacatttaaa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057592 True 382 lncRNA 0.46 2 5445769 5447230

Neighbor

gene id symbol gene type direction distance location
XLOC_027050 selenoo2 coding upstream 58291 5378338 ~ 5387478 (+)
XLOC_027049 zgc:113263 coding upstream 77611 5341592 ~ 5368158 (+)
XLOC_027048 apex1 coding upstream 105239 5333988 ~ 5340530 (+)
XLOC_027047 si:ch211-214j24.10 coding upstream 120433 5317483 ~ 5325336 (+)
XLOC_027046 NA coding upstream 141097 5302949 ~ 5304672 (+)
XLOC_027055 mapk11 coding downstream 59716 5506946 ~ 5522437 (+)
XLOC_027056 mapk12b coding downstream 76460 5523690 ~ 5530441 (+)
XLOC_027057 si:dkey-14d8.6 coding downstream 84353 5531583 ~ 5533803 (+)
XLOC_027058 si:dkey-14d8.7 coding downstream 89871 5537101 ~ 5539842 (+)
XLOC_027059 mrps18a coding downstream 195466 5642696 ~ 5645166 (+)
XLOC_027036 NA non-coding upstream 479219 4963839 ~ 4966550 (+)
XLOC_027035 NA non-coding upstream 483147 4938766 ~ 4962622 (+)
XLOC_027034 NA non-coding upstream 519708 4832804 ~ 4926061 (+)
XLOC_027032 NA non-coding upstream 730608 4711163 ~ 4715161 (+)
XLOC_027063 CU571169.1 non-coding downstream 378138 5825368 ~ 5826340 (+)
XLOC_027069 NA non-coding downstream 510173 5957403 ~ 5963871 (+)
XLOC_027071 NA non-coding downstream 969048 6416278 ~ 6508633 (+)
XLOC_027075 NA non-coding downstream 1231200 6678430 ~ 6695024 (+)
XLOC_027078 CR388190.2 non-coding downstream 1456319 6903549 ~ 6904239 (+)

Expression


Co-expression Network