XLOC_027056 (mapk12b)


Basic Information

Item Value
gene id XLOC_027056
gene name mapk12b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 5523690 ~ 5530441 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053340
TTACACTCGCTCTCCGAAACCCATCAATGAGCTGACTATTTTCAGTCTACAAGTAATCATTTCAACCTCATTTGTGCACAGGTAAATAACTCTTAAGTCTGAAGACTTTTAATGATGCTCTAATGTGGAGTCAGCGCGTCTCCAGTGCGTAATTGTGGAAACTTTGAACCGCCCCCCAAATCAGCCGGTGCGCTACAAGCCGCACTCTTTCTGCGAGAGCTTCTTTTACGAAAAAGAGATAAAATTATGAGAACGTAACAAGAATAGTTTTAAATTTGAAACGTCCAATACGTCTTCGAGGATGTCACTTCGAAGCAGGGCAGGATTTTATCGCCAGGAGATAAACAGAACCGTTTGGGACGTTCCAGAGAGATACAGAGATCTAATCCAGATCGGAACCGGAGCGTATGGAACAGTCTGTTCAGCCATTGACCGCAAGACAGGAGTTCGAGTGGCCATCAAGAAGCTCCACAGACCGTTCCAGTCCAGACTGTTCGCCAAGCGCGCTTACAGAGAGCTACGACTTCTCAAGCACATGAAACATGAGAATGTTATCGGGCTGCTGGATGTTTTTACCTCAGAAATCTTGTTGGACAGATTTCATGATTTttaCCTGGTGATGCCGTTTATGGGCACTGATCTGGGAAAGCTGATGAAAATGGAGAGACTGTGTGAGGACAGAGTGCAGTTTCTGGTCTATCAGATACTGCGGGGTCTGAAGTATATTCATTCAGCCGGGATCATTCACAGGGATCTCAAACCAGGAAATCTGGCAGTGAATCAAAACTGTGAACTTAAGATCCTGGACTTTGGACTTGCGCGTCAGGCGGATTCAGAAATGACGGGTTATGTGGTGACCCGCTGGTACAGAGCACCAGAGGTTATCCTCAACTGGATGCACTACTCACAAACAGttgatATCTGGTCAGTGGGCTGCATCATGGCGGAGATGTTACTTGGAAGGACACTTTTTAAAGGCAATGACCACCTAGACCAGCTGAGAGAGATCATGAAAATCACAGGAACTCCAGCTCCGGATTTCATCACCAAGCTACAAAGCCAAGATGCCAAAAACTACATCAGAGGTCTACCTAAAGTCCCAAAGAAAGACTTAAACACTATTTTCTTCAAAGCCAGCTCAGAAGcggTGAGTGCTCTGGAGCTAATGCTGGTTCTGGATCCAGATAAACGTGTAAGCGCTGCAGAGGCGCTCGAACTTCCCCTTTTTACAGAGTTCAGAGAACCTGAAGAAGAGACGGAGGCCCTGCCTTATGACCACTCCATGGACAACACAGAACTGCCTCTGGATCAGTGGAAACGTCACACTTTTACAGAGATCCTGTCATTCCAGCCGCCCGTCACAGAGATCAGAGACTCCAAAGAAACATCACTTTGAGTGAACACCGATTTACCTCAATGTCACTGAGCTTTATGCATAAATATGTGACATAAAGACATGGccaaacatttattaatgtaaactGTGTGACTTTGTAAATAAAAGTAAGAGTTGTTGATAATGTTGCTCTGTTATAAGGTTCCTGTTTATTATGAAATCATGTTAATTCTTTCAGAAGCATTTGAAATATAGAAAATACCCTGCAAA
>TCONS_00053341
CCTAGACCAGCTGAGAGAGATCATGAAAATCACAGGAACTCCAGCTCCGGATTTCATCACCAAGCTACAAAGCCAAGATGTGAGTGTGTCACACATAAAAAGAAAGATTAATTCATTACATTTTCACCCATGCATACACACAACTGATTTCTTCATCCATTCATACAGGCCAAAAACTACATCAGAGGTCTACCTAAAGTCCCAAAGAAAGACTTAAACACTATTTTCTTCAAAGCCAGCTCAGAAGcggTGAGTGCTCTGGAGCTAATGCTGGTTCTGGATCCAGATAAACGTGTAAGCGCTGCAGAGGCGCTCGAACTTCCCCTTTTTACAGAGTTCAGAGAACCTGAAGAAGAGACGGAGGCCCTGCCTTATGACCACTCCATGGACAACACAGAACTGCCTCTGGATCAGTGGAAACGTCACACTTTTACAGAGATCCTGTCATTCCAGCCGCCCGTCACAGAGATCAGAGACTCCAAAGAAACATCACTTTGAGTGAACACCGATTTACCTCAATGTCACTGAGCTTTATGCATAAATATGTGACATAAAGACATGGccaaacatttattaatgtaaactGTGTGACTTTGTAAATAAAAGTAAGAGTTGTTGATAATGTT

Function

symbol description
mapk12b Predicted to enable MAP kinase activity. Predicted to be involved in intracellular signal transduction. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm and nucleus. Orthologous to human MAPK12 (mitogen-activated protein kinase 12).

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0010468 regulation of gene expression biological_process
GO:0016310 phosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0004707 MAP kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041210-123 Predicted to enable MAP kinase activity. Predicted to be involved in intracellular signal transduction. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm and nucleus. Orthologous to human MAPK12 (mitogen-activated protein kinase 12).

Ensembl:

ensembl_id ENSDARG00000006409

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053340 False 1606 mRNA 0.44 12 5523690 5530441
TCONS_00053341 True 626 lncRNA 0.42 3 5528694 5530359

Neighbor

gene id symbol gene type direction distance location
XLOC_027055 mapk11 coding upstream 1253 5506946 ~ 5522437 (+)
XLOC_027051 si:dkey-14d8.20 coding upstream 29392 5392094 ~ 5494298 (+)
XLOC_027053 NA coding upstream 66742 5424860 ~ 5456948 (+)
XLOC_027052 BX324164.1 coding upstream 67632 5420906 ~ 5456058 (+)
XLOC_027054 NA coding upstream 76460 5445769 ~ 5447230 (+)
XLOC_027057 si:dkey-14d8.6 coding downstream 1142 5531583 ~ 5533803 (+)
XLOC_027058 si:dkey-14d8.7 coding downstream 6660 5537101 ~ 5539842 (+)
XLOC_027059 mrps18a coding downstream 112255 5642696 ~ 5645166 (+)
XLOC_027060 pou3f2a coding downstream 211292 5741733 ~ 5744457 (+)
XLOC_027061 ngs coding downstream 245906 5776347 ~ 5784895 (+)
XLOC_027046 NA non-coding upstream 219018 5302949 ~ 5304672 (+)
XLOC_027036 NA non-coding upstream 557140 4963839 ~ 4966550 (+)
XLOC_027063 CU571169.1 non-coding downstream 294927 5825368 ~ 5826340 (+)
XLOC_027069 NA non-coding downstream 426962 5957403 ~ 5963871 (+)
XLOC_027071 NA non-coding downstream 885837 6416278 ~ 6508633 (+)
XLOC_027075 NA non-coding downstream 1147989 6678430 ~ 6695024 (+)
XLOC_027078 CR388190.2 non-coding downstream 1373108 6903549 ~ 6904239 (+)

Expression


Co-expression Network