XLOC_027057 (si:dkey-14d8.6)


Basic Information

Item Value
gene id XLOC_027057
gene name si:dkey-14d8.6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 5531583 ~ 5533803 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053342
GATTGTCTTCTAATTTGACTAGACAACATCATGCAGAGAGCTGTTGTATTTCTGCTGCTGACCGCTCTCTTGGCCAATGGACAAGAGTTACGCTGGGAAAACTCCTATGATCAGCCCCTGAATTTTCAGTGTCCTCCAGGACAGTCCATATCCTATGTGAAGAGCCAACATGAGAATAAGTATGAAGACCGGGTGTGGGAGTTTGGCTGTAAAGACACCTTTAGCTCTGGTTCAGACTGTTTTCTGTCTCCGTACGTCAATGACTTCGACCAACAGTTCACCTATGAGTGTCCACCAAATCACATCATGTCAGGAATGAGCAGCTACCACAGTGATAAACACGAGGACAGAAGGTGGCAGTTCTATTGCTGTAGAGGTAACCGCGTCTGTACTGGTCAGTagaCCGTCGCTGGAAGTATCAGTACTGTGCCAAGTTGCAATGCTGAGACTCTCTCAAATGCAAATACAATCAAATTCAAACCTGAAATGAATACAAGACTAAACACAATGTCAAACTGGTGACTATTAG
>TCONS_00053343
CTTCTAATTTGACTAGACAACATCATGCAGAGAGCTGTTGTATTTCTGCTGCTGACCGCTCTCTTGGCCAATGGACAAGAGTTACGCTGGGAAAACTCCTATGATCAGCCCCTGAATTTTCAGTGTCCTCCAGGACAGTCCATATCCTATGTGAAGAGCCAACATGAGAATAAGTATGAAGACCGGGTGTGGGAGTTTGGCTGTAAAGACACCTTTAGCTCTGGTTCAGACTGTTTTCTGTCTCCGTACGTCAATGACTTCGACCAACAGTTCACCTATGAGTGTCCACCAAATCACATCATGTCAGGAATGAGCAGCTACCACAGTGATAAACACGAGGACAGAAGGTGGCAGTTCTATTGCTGTAGAGGTAACCGCGTCTGTACTGGTCAGTGTGAGTGGACCACTTATGTAAACTGGTTTGATGAGCTCTTTCACTGGACTGTCCCAAACCAACACTTCCTTACGGGTGTTGAAAGCTACCATGAGAATAAATACGAagaCCGTCGCTGGAAGTATCAGTACTGTGCCAAGTTGCAATGCTGAGACTCTCTCAAATGCAAATACAATCAAATTCAAACCTGAAATGAATACAAGACTAAACACAATGTCAAACTGGTGACTATTAGTGAAAAAGAAATCTGTAACAACTTATCAATACATTTCAGTCACATAA

Function

symbol description
si:dkey-14d8.6 Predicted to be involved in collagen fibril organization. Predicted to be located in extracellular region.

GO:

id name namespace
GO:0030199 collagen fibril organization biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-041210-124 Predicted to be involved in collagen fibril organization. Predicted to be located in extracellular region.

Ensembl:

ensembl_id ENSDARG00000045835

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053342 False 529 mRNA 0.45 5 5531583 5533756
TCONS_00053343 True 676 mRNA 0.43 5 5531589 5533803

Neighbor

gene id symbol gene type direction distance location
XLOC_027056 mapk12b coding upstream 1142 5523690 ~ 5530441 (+)
XLOC_027055 mapk11 coding upstream 9146 5506946 ~ 5522437 (+)
XLOC_027051 si:dkey-14d8.20 coding upstream 37285 5392094 ~ 5494298 (+)
XLOC_027058 si:dkey-14d8.7 coding downstream 3298 5537101 ~ 5539842 (+)
XLOC_027059 mrps18a coding downstream 108893 5642696 ~ 5645166 (+)
XLOC_027060 pou3f2a coding downstream 207930 5741733 ~ 5744457 (+)
XLOC_027061 ngs coding downstream 242544 5776347 ~ 5784895 (+)
XLOC_027062 si:ch73-352p4.8 coding downstream 262958 5796761 ~ 5807645 (+)
XLOC_027053 NA non-coding upstream 74635 5424860 ~ 5456948 (+)
XLOC_027052 BX324164.1 non-coding upstream 75525 5420906 ~ 5456058 (+)
XLOC_027054 NA non-coding upstream 84353 5445769 ~ 5447230 (+)
XLOC_027046 NA non-coding upstream 226911 5302949 ~ 5304672 (+)
XLOC_027036 NA non-coding upstream 565033 4963839 ~ 4966550 (+)
XLOC_027063 CU571169.1 non-coding downstream 291565 5825368 ~ 5826340 (+)
XLOC_027069 NA non-coding downstream 423600 5957403 ~ 5963871 (+)
XLOC_027071 NA non-coding downstream 882475 6416278 ~ 6508633 (+)
XLOC_027075 NA non-coding downstream 1144627 6678430 ~ 6695024 (+)
XLOC_027078 CR388190.2 non-coding downstream 1369746 6903549 ~ 6904239 (+)

Expression


Co-expression Network