XLOC_027060 (pou3f2a)


Basic Information

Item Value
gene id XLOC_027060
gene name pou3f2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 5741733 ~ 5744457 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053348
GCGCCTCTGCGTCCTCGCGGCTCTGGCGCGCTGGGGAGCCGCCTGTGGCACAGAGTAGCTGTGGAAACTATGGCGACCGCGGCGTCCAACCACTACAGCATCCTCACGTCCAGCGCGGAGCCCGGCAGCATGCAGCAGACGCCGCCGCCGGCCTACAGGGACGCGCACAGCCTGCTGCAGAGCGAGTACACCACCCTGCAGAGCAGCGGGGGCACGCTCGGCCACGCGCACCAGTGGCTGACGGCGGCGCTGTCTCACGGGGGAGAGGGGTCGCCGTGGCCCGCCAGCCCGCTGGGCGAGCAGGACATTAAGCCGGTGGAGGAGCTGCAGCACTCGCCGAGACAAGCGCATCTGGTGCCGCAGAGCCAGCATCACGAGACGGCCGCCTGGCGCGCCACGACCACCGCGCACATGCCGAGCATGAGCACCTCCAACGGGCAGAGCCTAATCTACTCTCAGCCCGGCTACGGCGAGATGCACCACGAGGAGCACCACAGCCCGCATCTGAGCGAGCACGGCCACCCGCAGAGCCTACACTCGGACGAGGACACGCCGACCTCCGACGACCTGGAGCAGTTCGCCAAGCAGTTCAAGCAGCGGCGGATCAAGCTGGGCTTCACGCAGGCGGACGTGGGGCTCGCGCTGGGGACCCTCTACGGCAACGTCTTCTCCCAGACCACCATCTGCAGGTTCGAGGCGCTCCAGCTGAGCTTCAAGAACATGTGCAAACTCAAGCCGCTGCTGAACAAGTGGCTGGAGGAGGCGGACTCCACTTCGGGAAGCCCGACCAGCCTGGATAAGATCGCCGCGCAGGGCAGGAAAAGGAAAAAGCGCACCTCCATCGAGGTGAGTGTCAAAGGGGCCCTGGAGAGCCATTTCCTCAAGTGCCCGAAACCAGGCGCGTCCGAGATCAACTCGCTGGCGGACAGCCTGCAGCTGGAGAAGGAGGTGGTGCGGGTCTGGTTCTGCAACCGGCGGCAGAAGGAGAAGCGGATGACGCCCCAAAATGGACCGATGGCCGGGAGCGAGGATGTGTACGGGGACGCCTCGCCTCACCACGGGGCGCAGACACCTGTTCCGTGAGAGAGGGGAGGATTGAACATAACCGACTGTCTCTTTGTCCCGGTCATAAGCCCGTTCTGGGCGGACCGACGGTGATGAAGCGTCTCTGTGTGTGGCACCTCCGAGCGCGCGTGGTTGCGCGAACAATATACGGGCACGGGCGCGAGAAAACGCGAGCAAACCGGGGCGCGCAGAATCTGAAGAGGAACGtatatattcttttatttaaGAGATTTCTTTTCAAGTCCGGGGATCTGTGAAAGCATCATATCACTTCCAACCGAAAGCTGTGAAAAGGCGTCAGGGGCGCGCCATCTTCCCCTCATGACCACAAAAGGTTTATTCCTGATTGATATTAATCCGGTGCAGTGTCTGCTCTCTCTTACGAATATTAATGGCAAatgcttcattattattattattattattattatttattattattattattattaattattataattattattatatgttccAGAATTCCAAAATAGTCGAATATAATACCAAACAAAATCACAAAGGGTTTAACACTAATcgaaattgtttaatttattcacCTGCATAATTAGACtaaatgcaataaattaaaataataataataataattattattattattattattattattatatttattttaattatttaaataaaaggaCTCAACAATTCAAACTAAtcgaaaaatgtaaattattattttattttacttgtctttttaaatattatttacatgcaCATAAAGGTATCACTGCAAAATATTAATGCAATTCTCTCATTTCGGTCACAACAAAGGCTGCCAAGTGCTGCTGTGTGTTTTTCACAGGCAAAGCAGCCCGATTTCATGCAGATCACGGATTCACACTGCTGGTGCAAAACAGAGGCCTGAGGAAACATTAAAGCCTCTCTAGAATCGCGCTGCTGTGGATCATCGAAATGACTGTTTTAAAAGAAATCCAATGATACCAGCTTCATAATTATCCActcagttgttgtttttaaatcatttttttataaGCATCCAAAAAATGAGGCAGGGGCtcttttttaaatagcatttgtttaatcaatcatttttgttatttCGTTTAATTTTTAGTTTCTGTATAATTTATGATTTCAAAAAGAAACCAAAATAGACTCATGttgcatataaaaacaaaccaagtttaattaatttattttcctagAAACGCGGAAATAATGCAGAAATCATGTCCAGATTTGTAAAAACaaagactaataataataataataataataatacaggccATTTTATTGCCAATTATTATTAAACTGTGTGATTTTGTGCGTCAACTAAATGTATAAGCCTCAACATGTTTGTATCTGTTTGCTATTTGTGTTTATCCCGAATTTGTCTTTTCCTTTAACGAGAACTACTATTACACCAGCTGTGTTACAATTATCTGATGGCCTGCATCGAAAAACAAGGACATTGTgcgttttcatttttatttttgatatatatatatattgctctgTGAATACTTGTATATTTGTGCACTTAACCTGGCACTGCCAAAGCACAAGCTGTCAGTGTGCCCTATTGAGACCGGTAATGTCTTTGGTTTTGACAGAAAAAATTGCACAGTTTTTAAAAGCCTTTTGTcattaaatgaatacatttttatataaa

Function

symbol description
pou3f2a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within brain development and regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in brain; neural keel; neural plate; and spinal cord. Orthologous to human POU3F2 (POU class 3 homeobox 2).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0007420 brain development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-980526-139 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within brain development and regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in brain; neural keel; neural plate; and spinal cord. Orthologous to human POU3F2 (POU class 3 homeobox 2).

Ensembl:

ensembl_id ENSDARG00000070220

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053348 True 2725 mRNA 0.46 1 5741733 5744457

Neighbor

gene id symbol gene type direction distance location
XLOC_027059 mrps18a coding upstream 96567 5642696 ~ 5645166 (+)
XLOC_027058 si:dkey-14d8.7 coding upstream 201891 5537101 ~ 5539842 (+)
XLOC_027057 si:dkey-14d8.6 coding upstream 207930 5531583 ~ 5533803 (+)
XLOC_027056 mapk12b coding upstream 211292 5523690 ~ 5530441 (+)
XLOC_027055 mapk11 coding upstream 219296 5506946 ~ 5522437 (+)
XLOC_027061 ngs coding downstream 31890 5776347 ~ 5784895 (+)
XLOC_027062 si:ch73-352p4.8 coding downstream 52304 5796761 ~ 5807645 (+)
XLOC_027063 CU571169.1 coding downstream 80911 5825368 ~ 5826340 (+)
XLOC_027064 si:ch73-352p4.5 coding downstream 87854 5832311 ~ 5834648 (+)
XLOC_027065 pex26 coding downstream 90936 5835393 ~ 5841031 (+)
XLOC_027053 NA non-coding upstream 284785 5424860 ~ 5456948 (+)
XLOC_027052 BX324164.1 non-coding upstream 285675 5420906 ~ 5456058 (+)
XLOC_027054 NA non-coding upstream 294503 5445769 ~ 5447230 (+)
XLOC_027046 NA non-coding upstream 437061 5302949 ~ 5304672 (+)
XLOC_027036 NA non-coding upstream 775183 4963839 ~ 4966550 (+)
XLOC_027069 NA non-coding downstream 212946 5957403 ~ 5963871 (+)
XLOC_027071 NA non-coding downstream 671821 6416278 ~ 6508633 (+)
XLOC_027075 NA non-coding downstream 933973 6678430 ~ 6695024 (+)
XLOC_027078 CR388190.2 non-coding downstream 1159092 6903549 ~ 6904239 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000020_07062984_07064003 POU3F2A coding CI01000020 null 7062427 ~ 7064315 (-)