G793662


Basic Information

Item Value
gene id G793662
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 31530058 ~ 31530985 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU903357
gttcatataaggaaacatGTCCGTTTAAATTAATTCATTAgtgcctaatctatggatttcacatgactgggaatacagatatgcatctgttggtcaaggatgccttttaaaaaaaagttaggaTTCGAAaacaagtcagtatctggtgtgaccaccatttgcctcattcaTTGcagcacatctccttcacatagagttgatcaaacTGTTAtcgcctgtggaatgttgtcccactcctcttcaatggttgtgcaaagttgctggaaaTTGGCACAACTGGAAAATGCTTTTGTACACATCAATCCAAtgtatcccaaacatgctcaatgtctgTAGAGTATGCAGGCTCAGCTTCCAGGATTCGCTTACCGATCCTTGGGACAAGGGgctgtgcattgtcatgctgaaacatgaggtgatggtggcagatgaatggtACAACAACGGGCCTctggatctcatcacagtatctctgtgcattcaaaattgccaacgataaaatgcaattgtgttcgttgtcccttgcttatgcctgcccattcaTAACCTGTTTTGAGAATtttgttctcaatgttcataaactgaaCTTCACTTTAATGACTCTGTCTATTactaagaatttgtaaggttcTTATTGAAATGAATTATACAGAGGCCAGTTTACAATAGTCAGTAAGGTTTATTTATGAGAGCGCTGCTGTACATATACAAAGACATTCCTTTTATAACTTTCTCTTaccctacacacatacatacacaccaacatagGGATTTTCTCATGAGTCTCACCACAGTTTATTACCACTCAGCTGACAGTTCCAGTCTCCCCCAGATACAAGAGCTCTGGAGGGGCTCTCCCTGTCTTATCTAATCTCCCCAGAGATACAGCCAGGtcggttcaaacataggttaatGCCCCTCTTCGTTC

Function

NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU903357 True 928 lncRNA 0.41 1 31530058 31530985

Neighbor

gene id symbol gene type direction distance location
LOC110531151 NA coding downstream 35564 31369483 ~ 31494494 (-)
LOC118965934 LOC106595224 coding downstream 489843 31038078 ~ 31040215 (-)
LOC118965933 NA coding downstream 695670 30832726 ~ 30834388 (-)
LOC110532982 NA coding downstream 1169266 30359807 ~ 30360792 (-)
LOC110531887 LOC106577486 coding downstream 2176459 29344381 ~ 29353599 (-)
LOC110531916 NA coding upstream 241982 31772967 ~ 31780212 (-)
LOC110531919 LOC106577449 coding upstream 562209 32093194 ~ 32102718 (-)
slx1b LOC106577450 coding upstream 583319 32114304 ~ 32122169 (-)
LOC110531923 LOC106577454 coding upstream 647294 32178279 ~ 32201170 (-)
LOC110531924 LOC106577455 coding upstream 686158 32217143 ~ 32220999 (-)
G793660 NA non-coding downstream 242 31529492 ~ 31529816 (-)
G793623 NA non-coding downstream 26655 31503074 ~ 31503403 (-)
G793611 NA non-coding downstream 32832 31496948 ~ 31497226 (-)
G793564 NA non-coding downstream 82015 31447827 ~ 31448043 (-)
G793507 NA non-coding downstream 100497 31429302 ~ 31429561 (-)
G793668 NA non-coding upstream 2841 31533826 ~ 31534047 (-)
G793676 NA non-coding upstream 7781 31538766 ~ 31538999 (-)
G793691 NA non-coding upstream 16833 31547818 ~ 31548047 (-)
G793735 NA non-coding upstream 48382 31579367 ~ 31579604 (-)
G793736 NA non-coding upstream 48621 31579606 ~ 31580015 (-)
G793489 NA other downstream 111085 31418455 ~ 31418973 (-)
G793472 NA other downstream 126189 31403482 ~ 31403869 (-)
G792267 NA other downstream 1172094 30315310 ~ 30357964 (-)
G790598 NA other downstream 2381041 29131374 ~ 29149017 (-)
G790551 NA other downstream 2460871 29068852 ~ 29069187 (-)
G793842 NA other upstream 130254 31661239 ~ 31662198 (-)
G794311 LOC106577443 other upstream 495086 32026071 ~ 32028445 (-)
G796733 rl32 other upstream 2520074 34051059 ~ 34057549 (-)
G797605 NA other upstream 3338970 34869955 ~ 34875879 (-)
G798195 NA other upstream 3823234 35354219 ~ 35354675 (-)

Expression


Co-expression Network