XLOC_027063 (CU571169.1)


Basic Information

Item Value
gene id XLOC_027063
gene name CU571169.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 5825368 ~ 5826340 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053353
GGAGTTTTGAGTTTGTGGAGGAGTGGAGAGAGACACGGGACTGGAGGTGGGCAGGAACAGTGACTGACCCAGAGGAAGCTGAATGGGTACCAGGTACGAGTCAGTCCGAGGCAGTAGAGGCTTCATCTTCCTCTCTGAGAGCAAAAAGACCATCAGAAAACAGTCTCACACCATAACACTCTGTGATTTGACCAAACACTCACCTGTGCCACCCAATGCAGGAACAAATCAAGAGATGATCTGAAGCTGACGGCATCCTTCtgtctgtccctgaaataaaataactgtaaggAGAGAAGCTGCTGTCTGTCTTACACCCTGTGCTTCTGCCATGAGAAGAGGAATTAGCGTAGCTTACTTGATGGATAGCAACTTGTGGGATCTGAGGGCAAGTGGGGGTCAACGGGTCACCCAAAGGCTGTGGGATGAGCCGGGAAATAAGAGATGACCACATTTTACAAAACAGCACTGTGGGTTCATAATGAAGCCATTAGGTTATTTATATTAAGACTAAAGTAAGATATACACACCTTATAGACTTGGTCCAGAGTGAGACAGCGGTTTGCTTCTGGTCGAATCGTCCAATAGGAGATCTTGCCATCAGGAGATGTTTCTCGGATGAACATGTCATGCAGTGACAGATTATGGCGTATGGAATTCTGATAAAATAGTGAAACGTACATTGGTCATTTTACATTAGAAGGTTGAAACTCTGTTGGCTTTCTACACTACCTTCCAACCAGGTTTGGCGACATCTCTGAAGTACGGAAAATGATCTTCGATCCAGTTGTAAATCTCCTTCAGGGTCATGTGTCTGTTATTCTTGCTGTTTATCGC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000100253

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053353 True 837 lncRNA 0.45 2 5825368 5826340

Neighbor

gene id symbol gene type direction distance location
XLOC_027062 si:ch73-352p4.8 coding upstream 17723 5796761 ~ 5807645 (+)
XLOC_027061 ngs coding upstream 40473 5776347 ~ 5784895 (+)
XLOC_027060 pou3f2a coding upstream 80911 5741733 ~ 5744457 (+)
XLOC_027059 mrps18a coding upstream 180202 5642696 ~ 5645166 (+)
XLOC_027058 si:dkey-14d8.7 coding upstream 285526 5537101 ~ 5539842 (+)
XLOC_027064 si:ch73-352p4.5 coding downstream 5971 5832311 ~ 5834648 (+)
XLOC_027065 pex26 coding downstream 9053 5835393 ~ 5841031 (+)
XLOC_027066 usp18 coding downstream 16093 5842433 ~ 5847937 (+)
XLOC_027067 lyrm5a coding downstream 21889 5848229 ~ 5850633 (+)
XLOC_027068 utp20 coding downstream 41694 5868034 ~ 5910043 (+)
XLOC_027053 NA non-coding upstream 368420 5424860 ~ 5456948 (+)
XLOC_027052 BX324164.1 non-coding upstream 369310 5420906 ~ 5456058 (+)
XLOC_027054 NA non-coding upstream 378138 5445769 ~ 5447230 (+)
XLOC_027046 NA non-coding upstream 520696 5302949 ~ 5304672 (+)
XLOC_027036 NA non-coding upstream 858818 4963839 ~ 4966550 (+)
XLOC_027069 NA non-coding downstream 131063 5957403 ~ 5963871 (+)
XLOC_027071 NA non-coding downstream 589938 6416278 ~ 6508633 (+)
XLOC_027075 NA non-coding downstream 852090 6678430 ~ 6695024 (+)
XLOC_027078 CR388190.2 non-coding downstream 1077209 6903549 ~ 6904239 (+)
XLOC_027079 CR388190.1 non-coding downstream 1088376 6914716 ~ 6914851 (+)

Expression


Co-expression Network