G793836


Basic Information

Item Value
gene id G793836
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 31655907 ~ 31662310 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU903532
AGTCCCCCTCTTCACGTCTCCAAAGAGACGTGAAAACTACTCATATGTGCATGTTTCAAACTCCACCAGAGGATCCtcctgttgtaggagggggaACATCAGTGCAGGGTCATTATTTGGTGCAATAGCAGAAGTAATAACTCGAGAAAGCGGGCACATGGGATGCAACAACAGCCACAGAGGGTTAATattgcaacaaacacagagatagagaccAGAATAGAAGAGACCAGGACCTTATATTTACCAAATGCATCCATCCAGGAGTCCCACGTGCTGgtaTCAACCCCAGAGTGGGATTTCATTTTACCATTCAGGGTACGCAGGCCTTCTAACGCAACAGTGAGACTGCCATCAGAGGCTGTGTTATTGGGGATAAATGTGCAACATTGCTCCCCAAACATAAAACATATCCCACCCTTCTCAGCCAGCAACATGTCAACGGCAATGCGATTTTGAAAAGCCATAAGGGAGGTAGCCGCCAGTTGACCATGTATGGCCTCAAAACCTTGTTGAGTCCAGTTACCTAATTTTTGGACATTGAAATGTATATAGTTAATGCGGTCAACATTTTTATTCACAGTGCACCACCAGCAGAGAGATGATTCAAAACCTGCGGCGACCTGGTCCACCAGCTTGTACTCATCAGGGACCCCCCTAGGAACACCTATAGCATCAATATACGTGGGATCCCCAACAGTCAGGGCTGCTTCCCGCTTGGTTCTGGTAGGCAGAAACTGTGGGTCCACAGCCTGTATCCGGGTCACCAAATCACCCACACCTATAGGGTAAACAGAGATAGGCAGCAGAAGTGTTACAAGCGCACAAGTACCCGTAGCATTATTGGGAGGTCTGTCAAAAAGCCGAGgtcccccacaccaccaccagatGTCAGCCCTGATCACTGGCTTAAAACCACCAACTACTACGATAGTATTTGTACACCAACCAACAGGGAGCAAACCTAACTGTAGTATACCCCCTGTCATGTTAATACAGGAGAATTTGGCCCAGGCAACATCAGAGGAAAATACTGGTGCCCTGACCGTAGCGGAGACAACAGGGTAAACTGCATCCCACAAGGAGCAATTACCATGGCCGGGACAATGCGGAGCAATGGTCTGGCACCCATGCAAACTACGCAACTAGTGGGGGTTGTATTGGATGCTTGTTCGGTCAATAATAACCAATTGTTAGACAAACCTGAGACACCTGTAGCAACCCGAATGTTCTCATCCGGGGTAGGGGTAGTGACCACTAAAACAGCAGAACCCCACCCATCCCTGTGCTGGGGTAGGGTATGTGGCTTTGCCATACTGTCACG

Function

NR:

description
uncharacterized protein LOC110493879

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU903532 True 1324 lncRNA 0.49 3 31655907 31662310

Neighbor

gene id symbol gene type direction distance location
LOC110531892 LOC106577482 coding upstream 1057560 30374371 ~ 30598347 (+)
LOC110531891 NA coding upstream 1369668 30282637 ~ 30288163 (+)
stim2b LOC106577483 coding upstream 2182118 29383092 ~ 29473789 (+)
tbc1d19 tbc1d19 coding upstream 2274238 29354116 ~ 29381669 (+)
rbpjb LOC106577485 coding upstream 2315554 29248127 ~ 29342203 (+)
LOC110531915 LOC106595846 coding downstream 90872 31753182 ~ 31757502 (+)
LOC110531917 LOC106608522 coding downstream 237750 31900060 ~ 31992396 (+)
LOC110531918 LOC106577443 coding downstream 340556 32002866 ~ 32027214 (+)
LOC118965935 NA coding downstream 415308 32077618 ~ 32078723 (+)
LOC110531922 LOC106577451 coding downstream 449482 32111792 ~ 32114299 (+)
G793784 NA non-coding upstream 41688 31613961 ~ 31614219 (+)
G793739 NA non-coding upstream 71358 31584248 ~ 31584549 (+)
G793716 NA non-coding upstream 93184 31562522 ~ 31562723 (+)
G793690 NA non-coding upstream 107859 31547820 ~ 31548048 (+)
G793649 NA non-coding upstream 132394 31523234 ~ 31523513 (+)
G793838 NA non-coding downstream 990 31663300 ~ 31663622 (+)
G793839 NA non-coding downstream 6547 31668857 ~ 31669505 (+)
G793848 NA non-coding downstream 11324 31673634 ~ 31673847 (+)
G793856 NA non-coding downstream 15855 31678165 ~ 31678440 (+)
G793877 NA non-coding downstream 27131 31689441 ~ 31689698 (+)
G793757 LOC107579696 other upstream 58989 31595996 ~ 31596918 (+)
taf6l taf6l other upstream 4168384 27480038 ~ 27487523 (+)
G787022 LOC106577527 other upstream 4276243 27379332 ~ 27379664 (+)
zgc:112271 bola2 other downstream 460372 32122682 ~ 32124851 (+)
G794892 NA other downstream 839537 32501847 ~ 32502355 (+)
G794893 NA other downstream 840086 32502396 ~ 32502749 (+)
G794886 LOC106577459 other downstream 921296 32583606 ~ 32587388 (+)

Expression


Co-expression Network