XLOC_027069


Basic Information

Item Value
gene id XLOC_027069
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 5957403 ~ 5963871 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057127
CACAGGTACACCGTTTTACTGGCGTCAAGTTGAGCTCCAGCAGATGACAGCTCAGTGCCAGACTCAtaatgtcagtcaacagcagatATTACAGCCAGACAGCGAAGACAAGCCACAGCAAGTGCAGAAATGGAGAGTAACGCGACTCACCTcagtgaagatacacacgtgtgtttgttgtgtttctGTAGCAGATCTTTGACCTGTTCTCAACAGCTGACGCTCCTCCACACACTCCTCCACATCCAGGCGGATTCACAGCTCCAGTAAAGGTATTTATGAGCTCATATTTCCAGTAGAGAGTCCagaaagtgtgtttgttgtgctgCTGCTCTGTCGCGTGTATGTTGGGGGAGGGACTTTCTGTAGAAAGCAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057127 True 376 lncRNA 0.48 2 5957403 5963871

Neighbor

gene id symbol gene type direction distance location
XLOC_027068 utp20 coding upstream 47360 5868034 ~ 5910043 (+)
XLOC_027067 lyrm5a coding upstream 106770 5848229 ~ 5850633 (+)
XLOC_027066 usp18 coding upstream 109466 5842433 ~ 5847937 (+)
XLOC_027065 pex26 coding upstream 116372 5835393 ~ 5841031 (+)
XLOC_027064 si:ch73-352p4.5 coding upstream 122755 5832311 ~ 5834648 (+)
XLOC_027070 tfec coding downstream 68769 6032640 ~ 6047236 (+)
XLOC_027071 NA coding downstream 452407 6416278 ~ 6508633 (+)
XLOC_027072 ppp1r3aa coding downstream 608493 6572364 ~ 6580610 (+)
XLOC_027073 si:dkey-112e7.2 coding downstream 675421 6639292 ~ 6640415 (+)
XLOC_027074 gpr85 coding downstream 679550 6643421 ~ 6647605 (+)
XLOC_027063 CU571169.1 non-coding upstream 131063 5825368 ~ 5826340 (+)
XLOC_027053 NA non-coding upstream 500455 5424860 ~ 5456948 (+)
XLOC_027052 BX324164.1 non-coding upstream 501345 5420906 ~ 5456058 (+)
XLOC_027054 NA non-coding upstream 510173 5445769 ~ 5447230 (+)
XLOC_027046 NA non-coding upstream 652731 5302949 ~ 5304672 (+)
XLOC_027075 NA non-coding downstream 714559 6678430 ~ 6695024 (+)
XLOC_027078 CR388190.2 non-coding downstream 939678 6903549 ~ 6904239 (+)
XLOC_027079 CR388190.1 non-coding downstream 950845 6914716 ~ 6914851 (+)
XLOC_027080 NA non-coding downstream 1041938 7005809 ~ 7020022 (+)

Expression


Co-expression Network