G794450


Basic Information

Item Value
gene id G794450
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 32221583 ~ 32223556 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU904210
CCACCAATATCGCAGCTTGCACTAAACAAGACAGATATATTATTTTCTATTGAATTTCTATGGCAACCAACTTTCCTTTTTTTGTTATCCAATTAATAACAGTGAAAAATATTCCACATAGAACTAAATAAATGAGGGACAAAAGTATGAAAAACACATTACAGCAACCTGTTTGACATTCAGGTAGTAATTGCTTAAGTCCTTTCACACACATGATGATTACTGTTTTGAAAGGGATCTCCCTTTCCGCTTCAGGAAAAAAACAACACCAAAACCAAATAAAACAACCATACCATTATCATCATTACTATATAGTAATCCATTTTCTATACATATATAAAATCATAGTTATTTGCAATGGTACATTTTAATTACACTTAAACAAAATTGTTATGAAACAAAGTAAATCCCATATTTTTTGGTGTCAAAACACTTGCATATGTACTCTTCAGAACAGAAATGTATACAGTTAAGTGACAGTTTTTCACCTCAGAATTGATTTCCCCTTGATTACCCCTTTGACAAATACAGACTAAGCATTTACCATAACTATTTTTTTAACAACTTTGAATACCATGTACAGTTCATGGCTACTATTATTTCCCATCAAACACATACTGTGGGTAGAAACCATTGTTCCTAAACTGCGAAAATGTTTCTTGAAATATGTTTCCTGAAACTGCGAAAATTTTTCTTGAAATATGCATTTTCTTCGCAAACGGATAATGGGTTTGTCGTTCAATGGTTTTTATTATGTTCTGCTGAttgtttttaaatacatttttacattatcTGAATGTGTCCACTCATTGGAGATGAAAGCAGGGATGACAGGAAAGGACACTAAGAGAGCCAGCCAAGAACCAGACAAGAGGTCTACTTCTCACAACTTCAACTCAAGAGCACCCCTATAAAAAAAGTTAATTTCACCATCTCATAATATCCATGACCATAGATTATGAGAAAGACGAGGCCCTAGTAAGAAAACCGATACAGTACAATAACTACTATTTAAGAGAAGGAACATACAGTATTCTGGGCACCCACTATCGATGTGTTGATACTGCATGATGGGAGTACTGCACAACGATGCGTTTCATAAAGCTTCCGATGGATGAACAAATACAATCATACTAGCAGAAACCCCCAAACCTTTAGTTCATTTGTTAAATACACTAATCAACAGAAAATTAAAAATGAGAAACCTTCTCCAACTTCTTGAAGGCCACCAATCATCGTTTCAATGACTAATTATATTAACCGAGTTTCATTCCatttaataaaaaaaagtttACCCCCAACCACAAGGCTCTTGATGAAGAGAGGAACATTAGTATATAGCTTCACAGAGAGGGATATAAGAACAATATGGTAGGTAGAGGTGTAACTGTTATCTAACCTCATCTGCTCTGGGCCCACGCCACTAATGccaaagacagaggagagagattaCTTTTATTCAAAACGTATGCCCAGTTTCATTTCATGTCCCTTTTCCTCACACCCtatgactttttgcaaatgtgAAGGAGTACACAGTGTGATGAAGGCTCCACCTAGCCCTCTTATAGGAGTGAGGTTTGTGCCAAATTGCCTTCACCTAGGATACCCTTCAGATCTGTGAACACTGACGGGGTAGAAGCTGAGGAAAGAGGGGCTAGGGACTAAAATGCAACCAAGTCTTAGGAATACCCCGTTCACCCATTGGATCAGACTGCAGCATCTAGATCTCTTAGAACAGAGAGCCAGTGGAGTGAAACATCCACACAATGGGAGGAGTGTAACTGTTCATTGGTAGGGTCCAATGAAGTAGGTTACGTCCTGGGAAACTTTCTAGTCAAAGACAGCCATTATGAGGTCAGTATATTTCGGGACAGGACTACCAGCTGCCTTTCTCCTTAGCCTCCCAGTAGCCTCCCTTATGTGAGTAGGG
>TU904214
CCACCAATATCGCAGCTTGCACTAAACAAGACAGATATATTATTTTCTATTGAATTTCTATGGCAACCAACTTTCCTTTTTTTGTTATCCAATTAATAACAGTGAAAAATATTCCACATAGAACTAAATAAATGAGGGACAAAAGTATGAAAAACACATTACAGCAACCTGTTTGACATTCAGGTAGTAATTGCTTAAGTCCTTTCACACACATGATGATTACTGTTTTGAAAGGGATCTCCCTTTCCGCTTCAGGAAAAAAACAACACCAAAACCAAATAAAACAACCATACCATTATCATCATTACTATATAGTAATCCATTTTCTATACATATATAAAATCATAGTTATTTGCAATGGTACATTTTAATTACACTTAAACAAAATTGTTATGAAACAAAGTAAATCCCATATTTTTTGGTGTCAAAACACTTGCATATGTACTCTTCAGAACAGAAATGTATACAGTTAAGTGACAGTTTTTCACCTCAGAATTGATTTCCCCTTGATTACCCCTTTGACAAATACAGACTAAGCATTTACCATAACTATTTTTTTAACAACTTTGAATACCATGTACAGTTCATGGCTACTATTATTTCCCATCAAACACATACTGTGGGTAGAAACCATTGTTCCTAAACTGCGAAAATGTTTCTTGAAATATGTTTCCTGAAACTGCGAAAATTTTTCTTGAAATATGCATTTTCTTCGCAAACGGATAATGGGTTTGTCGTTCAATGGTTTTTATTATGTTCTGCTGAttgtttttaaatacatttttacattatcTGAATGTGTCCACTCATTGGAGATGAAAGCAGGGATGACAGGAAAGGACACTAAGAGAGCCAGCCAAGAACCAGACAAGAGGTCTACTTCTCACAACTTCAACTCAAGAGCACCCCTATAAAAAAAGTTAATTTCACCATCTCATAATATCCATGACCATAGATTATGAGAAAGACGAGGCCCTAGTAAGAAAACCGATACAGTACAATAACTACTATTTAAGAGAAGGAACATACAGTATTCTGGGCACCCACTATCGATGTGTTGATACTGCATGATGGGAGTACTGCACAACGATGCGTTTCATAAAGCTTCCGATGGATGAACAAATACAATCATACTAGCAGAAACCCCCAAACCTTTAGTTCATTTGTTAAATACACTAATCAACAGAAAATTAAAAATGAGAAACCTTCTCCAACTTCTTGAAGGCCACCAATCATCGTTTCAATGACTAATTATATTAACCGAGTTTCATTCCatttaataaaaaaaagtttACCCCCAACCACAAGGCTCTTGATGAAGAGAGGAACATTAGTATATAGCTTCACAGAGAGGGATATAAGAACAATATGGTAGGTAGAGGTGTAACTGTTATCTAACCTCATCTGCTCTGGGCCCACGCCACTAATGccaaagacagaggagagagattaCTTTTATTCAAAACGTATGCCCAGTTTCATTTCATGTCCCTTTTCCTCACACCCtatgactttttgcaaatgtgAAGGAGTACACAGTGTGATGAAGGCTCCACCTAGCCCTCTTATAGGAGTGAGGTTTGTGCCAAATTGCCTTCACCTAGGATACCCTTCAGATCTGTGAACACTGACGGGGTAGAAGCTGAGGAAAGAGGGGCTAGGGACTAAAATGCAACCAAGTCTTAGGAATACCCCGTTCACCCATTGGATCAGACTGCAGCATCTAGATCTCTTAGAACAGAGAGCCAGTGGAGTGAAACATCCACACAATGGGAGGAGTGTAACTGTTCATTGGTAGGGTCCAATGAAGTAGGTTACGTCCTGGGAAACTTTCTAGTCAAAGACAGCCATTATGAGGTCAGTATATTTCGGGACAGGACTACCAGCTGCCTTTCTCCTTAGCCTCCCAGTAGCCTCCCTTATGTGAGTAGGGTCGTCGCAGCGTTTAAATCACTGCACCGTGTAGTTATCTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU904210 False 1933 lncRNA 0.38 1 32221583 32223515
TU904214 True 1974 lncRNA 0.38 1 32221583 32223556

Neighbor

gene id symbol gene type direction distance location
zgc:112271 bola2 coding upstream 96830 32122682 ~ 32124851 (+)
LOC110531922 LOC106577451 coding upstream 107284 32111792 ~ 32114299 (+)
LOC118965935 NA coding upstream 142860 32077618 ~ 32078723 (+)
LOC110531918 LOC106577443 coding upstream 194369 32002866 ~ 32027214 (+)
LOC110531917 LOC106608522 coding upstream 229187 31900060 ~ 31992396 (+)
rpl34 rpl34 coding downstream 270934 32494490 ~ 32498602 (+)
ostc ostc coding downstream 296522 32520078 ~ 32539651 (+)
trnag-ucc-3 NA coding downstream 811389 33032239 ~ 33061120 (+)
trnag-ucc-4 NA coding downstream 811895 33035451 ~ 33035522 (+)
trnag-ucc-6 NA coding downstream 819036 33042592 ~ 33042663 (+)
G794441 NA non-coding upstream 8819 32212521 ~ 32212764 (+)
G794440 NA non-coding upstream 10136 32211143 ~ 32211447 (+)
G794422 NA non-coding upstream 49541 32171843 ~ 32172042 (+)
G794419 NA non-coding upstream 53289 32167982 ~ 32168294 (+)
G794418 NA non-coding upstream 53610 32167704 ~ 32167973 (+)
G794456 NA non-coding downstream 8748 32232304 ~ 32232527 (+)
G794576 NA non-coding downstream 43235 32266791 ~ 32267041 (+)
G794585 LOC108260976 non-coding downstream 52574 32276130 ~ 32283607 (+)
G794847 NA non-coding downstream 241715 32465271 ~ 32465573 (+)
G794853 NA non-coding downstream 244346 32467902 ~ 32468362 (+)
LOC110531915 LOC106595846 other upstream 465138 31753182 ~ 31757502 (+)
G793757 LOC107579696 other upstream 624665 31595996 ~ 31596918 (+)
LOC110531891 NA other upstream 1933420 30282637 ~ 30288163 (+)
rbpjb LOC106577485 other upstream 2879380 29248127 ~ 29342203 (+)
G794892 NA other downstream 278291 32501847 ~ 32502355 (+)
G794893 NA other downstream 278840 32502396 ~ 32502749 (+)
G794886 LOC106577459 other downstream 360050 32583606 ~ 32587388 (+)
G796495 LOC106613263 other downstream 1897866 34121422 ~ 34121740 (+)
G797056 NA other downstream 2332375 34555931 ~ 34556622 (+)

Expression


Co-expression Network