XLOC_002707 (pbdc1)


Basic Information

Item Value
gene id XLOC_002707
gene name pbdc1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 20103067 ~ 20106012 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005028
CGTAGCTCATCCGGGTCAAAAGTCGTCAGCATGGACACGGGAGATGTGCTCGCATCTCTGGGTGTAGAGGGAGCCACCGCGGCTGCGCATGCGCTCTCTCTTCCAGCTGAGGCCTATGGAAATGATGCCCAGTTGGAGGTAATGTGGGCTATGAAAGCCTACAATCATGCTGAAGTTTACTTCAATCTTATTTCATCAGTTGATCCTAAATTTCTAAAACTAACTAAATCGGACGAGGAGATTTATACTAAATTTCGGGAAGCTTTTCCTGACCTCAATATTCAACTATTGGACCCGGAGCTGCTGAAGTCAGCAGAGGCTAAAGAGAACTGGAGGCCCTTTTGTAACCAGTTTGAAGGTATTGTTGAGGACTTCAACTATGGTACACTACTACGTCTAGACTGTCAAAAGGACTACACTGAAGAGAACACAATATTTGCAACCAGAATCCAGTTTTACGCCATTGAGATTGCCAGAAACAGAGAAGGCTACAATGACATTGTGCACAAAGCCAATTCAAAAACCAAACAACTGAAAAAAGACAAGAGTTAATCATGACTGCATGATCTTTAAAGTGGCCTTCTAGGTGTTGAGGAGACTTTCAACACATCACGTTCAACAATGGAGGAATACCTTTATAAATTCCTGAGATGGAAAGCTTAGATGTTTTTCtgtgtaattgtatttaaaatgGGCTTTTCAGTTGTATTCAAGAGTTGGATGGTGGATAATTTAAGTGAATTTTTCACTAATGTCTGGCaccattttgtttttgtaataaatccAGTTTTTCCCCTCTTAAAAATGAAATGGCTTGTTTGGTTAACTCAACATAACTGCATTTGCAAACAATGTTTTTCCAACTACGACAAGatatcagtgtttcctctaggggttttccagctgtggcggcaggacTTTTTTTACGGAGATCTTTCAATTACCAgtggcattatttcaatgacaaatgttgtgagcgcagtattacaactTGAGATCATTCTTGCAATACGAGCTTGCGTGCTGATTTTCtctgttcatgcacaaaacttcttgcacgccctcaaataaatgctgcttaaGCAGATTTTCTTGTGTGCTCTCAAATAAACCCTACTTTAGCGCATTTGTTACGAGTGTCTCCgacatttattaaatttgctaggaatatttcagAATGTTTCCAATAGACCTCCAGTACGGCATTGATGTGTCccgaagtaaagtgaaacggctataaactccagcaggCTAAAGTCACTGTATGCAGAACCATaaacctttatctataaataaagtataattatggaaactgaaA
>TCONS_00005029
GGTGTAGAGGGAGCCACCGCGGCTGCGCATGCGCTCTCTCTTCCAGCTGAGGCCTATGGAAATGATGCCCAGTTGGAGGTAATGTGGGCTATGAAAGCCTACAATCATGCTGAAGTTTACTTCAATCTTATTTCATCAGTTGATCCTAAATTTCTAAAACTAACTAAATCGGACGAGGAGATTTATACTAAATTTCGGGAAGCTTTTCCTGACCTCAATATTCAACTATTGGACCCGGAGCTGCTGAAGTCAGCAGAGGCTAAAGAGAACTGGAGGCCCTTTTGTAACCAGTTTGAAGGTATTGTTGAGGACTTCAACTATGGTACACTACTACGTCTAGACTGTCAAAAGGACTACACTGAAGAGAACACAATATTTGCAACCAGAATCCAGTTTTACGCCATTGAGATTGCCAGAAACAGAGAAGGCTACAATGACATTGTGCACAAAGCCAATTCAAAAACCAAACAACTGAAAAAAGACAAGAGTTAATCATGACTGCATGATCTTTAAAGTGGCCTTCTAGGTGTTGAGGAGACTTTCAACACATCACGTTCAACAATGGAGGAATACCTTTATAAATTCCTGAGATGGAAAGCTTAGATGTTTTTCtgtgtaattgtatttaaaatgGGCTTTTCAGTTGTATTCAAGAGTTGGATGGTGGATAATTTAAGTGAATTTTTCACTAATGTCTGGCaccattttgtttttgtaataaatccAGTTTTTCCCCTCTT
>TCONS_00005030
CGTAGCTCATCCGGGTCAAAAGTCGTCAGCATGGACACGGGAGATGTGCTCGCATCTCTGGGTGTAGAGGGAGCCACCGCGGCTGCGCATGCGCTCTCTCTTCCAGCTGAGGCCTATGGAAATGATGCCCAGTTGGAGGTAATGTGGGCTATGAAAGCCTACAATCATGCTGAAGTTTACTTCAATGTAAGTGAACAAAATGCCACAACCTGTCCTGCTGTTTTGATTGCTTTAGTGTATATCGTTTAGTTTACCTGTGGTTTGTTTTTCTACAGCTTATTTCATCAGTTGATCCTAAATTTCTAAAACTAACTAAATCGGACGAGGAGATTTATACTAAATTTCGGGAAGCTTTTCCTGACCTCAATATTCAACTATTGGACCCGGAGCTGCTGAAGTCAGCAGAGGCTAAAGAGAACTGGAGGCCCTTTTGTAACCAGTTTGAAGGTATTGTTGAGGACTTCAACTATGGTACACTACTACGTCTAGACTGTCAAAAGGACTACACTGAAGAGAACACAATATTTGCAACCAGAATCCAGTTTTACGCCATTGAGATTGCCAGAAACAGAGAAGGCTACAATGACATTGTGCACAAAGCCAATTCAAAAACCAAACAACTGAAAAAAGACAAGAGTTAATCATGACTGCATGATCTTTAAAGTGGCCTTCTAGGTGTTGAGGAGACTTTCAACACATCACGTTCAACAATGGAGGAATACCTTTATAAATTCCTGAGATGGAAAGCTTAGATGTTTTTCtgtgtaattgtatttaaaatgGGCTTTTCAGTTGTATTCAAGAGTTGGATGGTGGATAATTTAAGTGAATTTTTCACTAATGTCTGGCaccattttgt

Function

symbol description
pbdc1 Is expressed in several structures, including immature eye; mesoderm; midbrain; musculature system; and sensory system. Orthologous to human PBDC1 (polysaccharide biosynthesis domain containing 1).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-459 Is expressed in several structures, including immature eye; mesoderm; midbrain; musculature system; and sensory system. Orthologous to human PBDC1 (polysaccharide biosynthesis domain containing 1).

Ensembl:

ensembl_id ENSDARG00000057299

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005028 False 1318 mRNA 0.40 6 20103067 20106012
TCONS_00005029 False 740 mRNA 0.40 5 20103585 20105553
TCONS_00005030 True 859 lncRNA 0.41 5 20103615 20106012

Neighbor

gene id symbol gene type direction distance location
XLOC_002706 NA coding downstream 37918 20033900 ~ 20065149 (-)
XLOC_002705 NA coding downstream 106336 19931298 ~ 19996731 (-)
XLOC_002704 gfra2b coding downstream 301246 19723025 ~ 19801821 (-)
XLOC_002702 si:ch211-127i16.2 coding downstream 579315 19427474 ~ 19523752 (-)
XLOC_002703 NA coding downstream 581363 19518885 ~ 19521704 (-)
XLOC_002708 CR450836.1 coding upstream 37785 20143797 ~ 20151328 (-)
XLOC_002709 htr7b coding upstream 52826 20158838 ~ 20175118 (-)
XLOC_002710 NA coding upstream 128002 20234014 ~ 20236971 (-)
XLOC_002711 zmat4b coding upstream 164819 20270831 ~ 20339138 (-)
XLOC_002712 sfrp1b coding upstream 245401 20351413 ~ 20357013 (-)
XLOC_002701 NA non-coding downstream 1010461 19088996 ~ 19092606 (-)
XLOC_002698 NA non-coding downstream 1816124 18284414 ~ 18286943 (-)
XLOC_002697 NA non-coding downstream 1820111 18274014 ~ 18282956 (-)
XLOC_002714 NA non-coding upstream 342627 20448639 ~ 20456007 (-)
XLOC_002716 BX294119.1 non-coding upstream 377802 20483814 ~ 20483930 (-)
XLOC_002720 NA non-coding upstream 510764 20616776 ~ 20618813 (-)

Expression


Co-expression Network