G794585 (LOC108260976)


Basic Information

Item Value
gene id G794585
gene name LOC108260976
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 32276130 ~ 32283607 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU904365
ccctaaccctgacacatacagtacatacagtatattgctgTTGGTTTTGTGATATCCATGTTCCTAGAAGTTGACTGTTTCTTGTGAGGAGGCTCTTTGCCAGAATAGGCATTTACCTCTGAGTGGAGTGAATTTGAATTCAAAACCAAAGACGTAAGGTAATGCTGTTATATGTTGAGTTATCTAATCACTTTGTtgtataaacaaaacaaaaatggctTTTTGCAGATTTTTGTGTGAGGATCATGGTCACTACTGTTGATTGATACTTCTTCGTAAAAGTCACTCGATGGTTAATTGGTAATAAAAAGAAGGAACACTAACTTGAAGTACAGCGTGGGTGactgtgaaaatgactgcatgaGAATTGCTAACTTAATACATAATTCAATAATTCTGTGTGCATGTTTCAGTTTGCTGCAAAATACTGGTAATATAACCTCAATTGATTTGCTATTACTGTATACAGAGAGTATACAGACTGCATATATGCAGACAAAAACACCTTTCAATTGAAAATAAATTGCACAAGGTTGATAGATATTAACCACACATATTTGTTGACATTTTGTACATAGAAGCCTAATATTATTGTGTCAAAGAAATAGCGAAATGTTAAATATTAGACAATTCATTATTTTTTGAGAGAAAATTCTCACAGGTATAACACAATTCAGCCTGATATTTTTTTATCATGCATTTCCCTCCTACTATAAACTTCTCTAGGAGCCTGAATATTCAAGTCTTAATTTCAAGAGTGTGCTAAACATTCACTAATCTAAATAGATCATTGTATGATTCTTTCAAACATTGAGTGCCAGTTATTTTATCTACTACCTTATTTTGACATAGACATATTGGTTATGAGTGTCCTATCTGAGTTTACACATGCTTTGCTTATTCAGAGTGAATAACATTGTAAGCTATTATATATTCTGAGATGCTACAGTTAAGGCTGATTCAATCATGTGCAGATAAAGGAAAACTACCCTGTGGTTTCACTCAGAAACTCTTCTTCTTGCAGACTGTTGGCGTTATGCTAAATTGAGATGTGAATGAATGATTCATGCAAAATTACCAGTTGCATTCGCGTATCTCAACTCTGAATAAGGTCCGTAGTCATTGGATATTGATGTGTGAAAACATCTGTCCTTTGCAGAATAAACATTGGGTCAATCGTGGTGCGGTTTTCCTTTTCTGCAAATTGATTGAATTGGGTTCCAAGTCAACATTTTCCAGTAGAGTTTAATTGGCGTGTGAAGAATGGCAAGCTCTGTACATTATGAACTCTTATGTCCAATGGCAGGTGGAGAAGAGGATAAGATAATCAGTAGGCCTATCAAGACCCAGGAAGAGTCAAAGTCcacctacagtacatattactgCGACAGTACAACTGACGCTACTACTATTTCAGTAATTATAGCTAGTGTGTCAATCAAAGAGACATGGTGAGCAATGACATCTGGAAGGGTGGATGTAAAGTTTGAGCTTTTGGACAGAACACAAGATGAATTAGGAAAAATCTGTTCCTATCTCCAGCTCTGCATGCAAAACTGCTTGGACTGTTTCATCTTTTGATGCTTGGTCACTAAGTACACAAGAGAGGAGAAGTTTATGGCTCAAAACCATATTTTAGTCTTATGTAAAACCAATGCTTTGTGTGTAGCATCAGCAACATCCCTTCATCCAAGGGTTGCTCATCATCAAACTCACTAGAACAACAGACACTGGAGTGACAAGTTGAGTGAAGTCATCTAGTCAGTCAGTGAAGTCAGTTAGAGGGTCATCCAAAGTGTtattttaaaagttttttttttacaatcaatCCTGAAGCTGAGAACAATATTGTGGCAACACCTGTCTGTTGTGCCAAGCTCAGCCAGCTTTGTCAGAAGTCTCTTGTGTACTTCATGACCTCAAAGTCCACAGGAGGTCAGAATCCTCAATCTGCTAGGAGTAGTCCAGAATCAACTGATCTAGTAAAACAGGTGACATGCATAAGATGGCATAGTTGTTCCTCTACCTGGCTAATACACCACGCAccatccccccaaaaatgtaaaccCCCAGCCATCTACACGcacacatttttttaatttatCTACTTCCGACCAATGAATCCGCTGAGCCATATCTTGCGCCCTCATTCTTGTAGGAGTCTTTCCTCCATCCCATCCCCATGCTTCTTGAATCTTGTGTTAGGGGTGAATGCTTTCTGgcaggagtggagggagaggattTTCAAATGGATATAGGGCAGGCGATGATCTTGTCTTCCAGCATAACGCTGACCACCAGGAACACTAAGTAGAGCACGAACATGATGAAGCCCAGCAGTTTGCTCATCCGCCACTTGCAGGCAGCAATTGAGATAATGACAAAGATGAGCATGAGGAACAGCAGCACAATGGCGCAGAACAGCCCGTTAGAACTCACCGCCACAGGCTGCATGTTGTTGATGATGGACCAGAGGAGCCATGGGAATGGCAGGCTGAAACAcacaaaCCAACAGTGATGTCAAAGATGTTGGAGCCCACAGAGCTGGACACAGCCATGTCTCCCAGCCCCTTCCGTGCAACAATGACACTGGTGATTAGGTCAGGAATGGAGGTACCAGCTGCTAATATAGTCAAGCCCATGATCTCTTCTGTAATCCCAATGGTCTCTCCAACCTGTAGATAGAAAAGAGAAATAAATTGGGTAAATaaaactaaatattttttttcttcgctGAGGGGTTGAGTAGAGGAATGAAAGTGAGCTATACTTTggacatattttttattttttttctccattctgTTAACATGCATGAGGAGAAAATCCCAGTATTCGGGGACAGGAGATACTTTGGCACTCACTCT

Function

NR:

description
sodium/potassium/calcium exchanger 2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU904365 True 2867 lncRNA 0.39 2 32276130 32283607

Neighbor

gene id symbol gene type direction distance location
zgc:112271 bola2 coding upstream 151377 32122682 ~ 32124851 (+)
LOC110531922 LOC106577451 coding upstream 161831 32111792 ~ 32114299 (+)
LOC118965935 NA coding upstream 197407 32077618 ~ 32078723 (+)
LOC110531918 LOC106577443 coding upstream 248916 32002866 ~ 32027214 (+)
LOC110531917 LOC106608522 coding upstream 283734 31900060 ~ 31992396 (+)
rpl34 rpl34 coding downstream 210883 32494490 ~ 32498602 (+)
ostc ostc coding downstream 236471 32520078 ~ 32539651 (+)
trnag-ucc-3 NA coding downstream 751338 33032239 ~ 33061120 (+)
trnag-ucc-4 NA coding downstream 751844 33035451 ~ 33035522 (+)
trnag-ucc-6 NA coding downstream 758985 33042592 ~ 33042663 (+)
G794576 NA non-coding upstream 9089 32266791 ~ 32267041 (+)
G794456 NA non-coding upstream 43603 32232304 ~ 32232527 (+)
G794450 NA non-coding upstream 52574 32221583 ~ 32223556 (+)
G794441 NA non-coding upstream 63366 32212521 ~ 32212764 (+)
G794440 NA non-coding upstream 64683 32211143 ~ 32211447 (+)
G794847 NA non-coding downstream 181664 32465271 ~ 32465573 (+)
G794853 NA non-coding downstream 184295 32467902 ~ 32468362 (+)
G794860 NA non-coding downstream 192513 32476120 ~ 32476323 (+)
G794871 NA non-coding downstream 197062 32480669 ~ 32480901 (+)
G794890 NA non-coding downstream 210427 32494034 ~ 32494246 (+)
LOC110531915 LOC106595846 other upstream 519685 31753182 ~ 31757502 (+)
G793757 LOC107579696 other upstream 679212 31595996 ~ 31596918 (+)
LOC110531891 NA other upstream 1987967 30282637 ~ 30288163 (+)
rbpjb LOC106577485 other upstream 2933927 29248127 ~ 29342203 (+)
G794892 NA other downstream 218240 32501847 ~ 32502355 (+)
G794893 NA other downstream 218789 32502396 ~ 32502749 (+)
G794886 LOC106577459 other downstream 299999 32583606 ~ 32587388 (+)
G796495 LOC106613263 other downstream 1837815 34121422 ~ 34121740 (+)
G797056 NA other downstream 2272324 34555931 ~ 34556622 (+)

Expression


Co-expression Network