G795438


Basic Information

Item Value
gene id G795438
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 33116207 ~ 33123231 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU905392
ttgattctagaagatcgggtcttcgggttggttcaggctgaggtgtagtcttcttggattggccctgttgggccgtccgtcatccctctgagtcttgttctttgtcacacaatgttcagctaaaaaggagattaggtgtgtgcgctgtcctcagtcacacaatgttcggctagaaaggagattaggtgtgtgcgctggtttctgcaagtcaaggctgtctcttcctcccaatgtgtgggtgtatgtcttatctgtgtgtcctcggcagttagtgtgtgtaatgtgtgtgtgctgtgtgtgtgggtgtgggagctatcctgtatgggacctaacatgttttactgtgaaaatacgttgtctcagttatagcaatgtaatagc
>TU905393
ttgattctagaagatcgggtcttcgggttggttcaggctgaggtgtagtcttcttggattggccctgttgggccgtccgtcatccctctgagtcttgttctttgtcacacaatgttcagctaaaaaggagattaggtgtgtgcgctgtcctcagtcacacaatgttcggctagaaaggagattaggtgtgtgcgctgtcctcagtcacacaatgttcggctagaaaggagattaggtgtgtgcgctggtttctgcaagtcaaggctgtctcttcctcccaatgtgtgggtgtatgtcttatctgtgtgtcctcggcagttagtgtgtgtaatgtgtgtgtgctgtgtgtgtgggtgtgggagctatcctgtatgggacctaacatgttttactgtgaaaatacgttgtctcagttatagcaatgtaatagc
>TU905394
ttgattctagaagatcgggtcttcgggttggttcaggctgaggtgtagtcttcttggattggccctgttgggccgtccgtcatccctctgagtcttgttctttgtcacacaatgttcagctaaaaaggagattaggtgtgtgcgctgtcctcagtcacacaatgttcggctagaaaggagattaggtgtgtgcgctggtttctgcaagtcaaggctgtctcttcctcccaatgtgtgggtgtatgtcttatctgtgtgtcctcggcagttagtgtgtgtaatgtgtgtgtgctgtgtgtgtgggtgtgggagctatcctgtatgggacctaacatgttttactgtgaaaatacgttgtctcagttatagcaatgtaatagc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU905392 False 381 lncRNA 0.48 2 33116207 33123231
TU905393 False 431 lncRNA 0.48 2 33116207 33123231
TU905394 True 381 lncRNA 0.48 2 33116207 33123231

Neighbor

gene id symbol gene type direction distance location
trnag-ucc-47 NA coding upstream 1529 33114607 ~ 33114678 (+)
trnag-ucc-46 NA coding upstream 5759 33110377 ~ 33110448 (+)
trnag-ucc-45 NA coding upstream 23609 33092527 ~ 33092598 (+)
trnag-ucc-44 NA coding upstream 24879 33091257 ~ 33091328 (+)
trnag-ucc-43 NA coding upstream 26149 33089987 ~ 33090058 (+)
trnag-ucc-48 NA coding downstream 62 33123293 ~ 33123364 (+)
trnag-ucc-49 NA coding downstream 1331 33124562 ~ 33124633 (+)
trnag-ucc-50 NA coding downstream 2724 33125955 ~ 33126026 (+)
trnag-ucc-51 NA coding downstream 4117 33127348 ~ 33127419 (+)
trnag-ucc-52 NA coding downstream 5510 33128741 ~ 33128812 (+)
G795437 NA non-coding upstream 9484 33106249 ~ 33106723 (+)
trnag-ucc-19 NA non-coding upstream 49933 33029550 ~ 33066274 (+)
trnag-ucc-3 NA non-coding upstream 55087 33032239 ~ 33061120 (+)
trnag-ucc-10 NA non-coding upstream 66772 33046280 ~ 33049435 (+)
G795141 NA non-coding upstream 87026 32971724 ~ 33029181 (+)
G795442 NA non-coding downstream 20150 33143381 ~ 33143673 (+)
G795445 NA non-coding downstream 65117 33188348 ~ 33233498 (+)
G795447 NA non-coding downstream 107844 33231075 ~ 33232779 (+)
G795477 NA non-coding downstream 127790 33251021 ~ 33316895 (+)
G795560 NA non-coding downstream 198972 33322203 ~ 33322608 (+)
G794886 LOC106577459 other upstream 528819 32583606 ~ 32587388 (+)
G794893 NA other upstream 613458 32502396 ~ 32502749 (+)
G794892 NA other upstream 613852 32501847 ~ 32502355 (+)
zgc:112271 bola2 other upstream 991356 32122682 ~ 32124851 (+)
LOC110531915 LOC106595846 other upstream 1359762 31753182 ~ 31757502 (+)
G796495 LOC106613263 other downstream 998191 34121422 ~ 34121740 (+)
G797056 NA other downstream 1432700 34555931 ~ 34556622 (+)
G797932 pphln other downstream 2241757 35364988 ~ 35372148 (+)
G799053 NA other downstream 3189898 36313129 ~ 36316805 (+)
G799578 LOC106571900 other downstream 3911187 37034418 ~ 37035918 (+)

Expression


Co-expression Network