G796030


Basic Information

Item Value
gene id G796030
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 33708803 ~ 33710918 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU906056
CATAGTTTCTTACCACTTAGCAGACAGGTCCAGATACGGAAAACCTGTAGGGGCTCTCGCTGTCTTATTTTATCGCCACAGAGTTATAGCTGAGtcggttcaaacataggttaatgaatctctttgcttactttagacacacacacatacattccttCATCCACAATGGTTATCATTTCCAATTACCCCTTGTCCATGCTACATAACCTCTTTCTTAGGAACTAACATTAATCAGATTTTGTAAAACAGGGTAGAGTTgaattagttatagttctatttaaatgtacacattgtttagtcattattcataaaagtCCTAACAATCCACCCTTAATGACTAAATAATTCATACTGACATATCAAACACTATATGGAAACATTAATGTTATTCAAAAATATACCAAAACAATACACATATTTAcattcaattcctcatcaatgaCTGTTCTAGGCCTTCATCAGAATCATAACTCTTCTTATCAGGATTTTCATTACAATCTTCTTCAAAGAAACAGTCTAAACATTAAAACAAGAAACCATCTAAATTCCCTAAACATCAAAAATAGTCTCATCTAACATATGCTCCTCGTATGTGAAGGATCAGGATTCATCTACTAGGTCTGGAGCCATGTATTCATCATTCCACTGGTCAGAGCTTGGAATCCGTCCGTACCTCACCATCTGTTGTGTCATCGATTTCTCCAGAGTCCTAGAAATGAGAACCTTTCTCACAACATCCACACAAaactaacacagtcacacaggtgaaGGTTGCCCAAAACACAGTGATCATGTCGTTTATTCATATCCCAGACCCACTATCAAACCAATTTGTTAGAGCATTATCTACCCCAGAGCTCCTTGCCAGGCCTTGGTCACTGATCCGTCTGGAGCTGTATCATCGGGGATGAAATTACAATATTCTGCTCCGAACCTCATACACCCCTCACACTTTTCAGCCAGTAACATATCCAAGGCTATTCTATTCTGCCAAGCCATCAGGCTGGTCGCTTCAGTCTGCTCCACCAATCCTTTTATTGCATCTCTGGTATCATTGATGAAATGCTGCGGATTATAATAAACATAATTGATCCAGTCCATATTCTTATTGAGAGTGGACCACCAGAAAATACTTGACTCTTATCCTGCTAGGATCTGATTTCTTGCTTTGAACTCGTCTGGCACCCCCCGTGGAACAGCAATGCCATCAATGTAAACTCTATTATCAAAAGATCCTGAATgagcactccttctctctcttctacctggCGCTGGGTAAGGGTAAAGAGCATGCCTAGCTGCACTAGTGCACAACTACCGGTCCAATTGGTAGGCAGGTTAGGTCACAGTCTCACACCTCCACAAATCACCAGACATCCACTCCAGGCCTTTTCATCTGCCAGTTGAGTCTCACTTCCCCTATCCGTGTGTGTTGTAGCGAGCCATACAATAATAATGTAATCCTGTAACTGTGAAAGGGGATATCAGAATGTAATGGACACATAGGGATAAAGATAATGCAGATCAATGCAACTGTCATTGTCTGGTTTCCCTGCCTTCATTTACCATACAGGCCATTCCCCTGGGTGAATAAATTACAGCATttccacttttggataaatagcgtgcccaatttcaacttcctgctactcatgccaggaatataagatatgcatatcattagtagatttggatagaaaacactctgacgtttctaaaactgtttgaatcatgtctgtgagtataacagaacttatgtagcaggcaaaacccgaggactaaccattcagaaaTCTTTTTCTTAGGTCTttgtctgtttagtgagttctcattgggaaacgatatttcttaggcacttgttCTCTTgttggatgtcaccagtctttggaatttggttgaggttattcctttgtgcaatgaagaagtacggccatctaggaactgggtaacactgcgcaagacttgaaaagtagcgttggtttgttgtcttcctgtattgaacactgatagacccgtcttcaatttgatcgattattaacgtttaaaaatacctaaagttgtattacaaaagtagtttgaaatgttttggcaaagtttacaggcaaatTTTTAGATA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU906056 True 2116 lncRNA 0.40 1 33708803 33710918

Neighbor

gene id symbol gene type direction distance location
LOC118966028 NA coding downstream 365958 33341652 ~ 33342845 (-)
LOC110531942 LOC106571840 coding downstream 389814 33283869 ~ 33318989 (-)
trnap-agg-56 NA coding downstream 475382 33233350 ~ 33233421 (-)
trnap-agg-55 NA coding downstream 476028 33232704 ~ 33232775 (-)
trnap-agg-54 NA coding downstream 477437 33231295 ~ 33231366 (-)
LOC110531946 LOC106571846 coding upstream 68530 33779448 ~ 33801499 (-)
LOC110531948 LOC106571850 coding upstream 229517 33940435 ~ 33999008 (-)
LOC110531949 LOC106571850 coding upstream 296034 34006952 ~ 34034490 (-)
LOC110531953 LOC106571856 coding upstream 422652 34133570 ~ 34163176 (-)
LOC110531153 LOC106571861 coding upstream 649060 34359904 ~ 34361763 (-)
G796027 NA non-coding downstream 8062 33700367 ~ 33700741 (-)
G796026 NA non-coding downstream 8552 33699962 ~ 33700251 (-)
G796025 NA non-coding downstream 8853 33699617 ~ 33699950 (-)
G796018 NA non-coding downstream 13282 33695130 ~ 33695521 (-)
G796015 NA non-coding downstream 16080 33692471 ~ 33692723 (-)
G796031 NA non-coding upstream 1247 33712165 ~ 33713122 (-)
G796032 NA non-coding upstream 2263 33713181 ~ 33713386 (-)
G796056 NA non-coding upstream 18964 33729882 ~ 33730221 (-)
G796058 NA non-coding upstream 20174 33731092 ~ 33731316 (-)
G796245 NA non-coding upstream 112582 33823500 ~ 33826292 (-)
G794311 LOC106577443 other downstream 1680535 32026071 ~ 32028445 (-)
G793842 NA other downstream 2046605 31661239 ~ 31662198 (-)
G793489 NA other downstream 2289830 31418455 ~ 31418973 (-)
G793472 NA other downstream 2304934 31403482 ~ 31403869 (-)
G792267 NA other downstream 3350839 30315310 ~ 30357964 (-)
G796733 rl32 other upstream 340141 34051059 ~ 34057549 (-)
G797605 NA other upstream 1159037 34869955 ~ 34875879 (-)
G798195 NA other upstream 1643301 35354219 ~ 35354675 (-)
LOC110531966 LOC106571884 other upstream 1674935 35381661 ~ 35400349 (-)
LOC118966032 LOC106571870 other upstream 1781108 35492026 ~ 35521884 (-)

Expression


Co-expression Network