XLOC_027086 (tnnt2e)


Basic Information

Item Value
gene id XLOC_027086
gene name tnnt2e
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 7508316 ~ 7544687 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053392
GAAACTGTCTGCTGCACCAACCATCAAGATAAGATCCCTCTCTTTCTCCTTGAGCAGATCTCAGGAGTCAACTAGTCATGGCTGACACAGAAGACGTTGTGGAGGAGGAAGTGCAGGAAGTGGAGGAAACCGAAGAGGAAGTGgaagTGCCGCCTCCAACAGAGGAAGAGCCAGCCCCTGAAGTGGAAGAGCCTCCGGAAGTCGAAGAGGAGCCAGAACCAGAACCACAAGAAGCCCCGGTTGCGGAGGAAGTCACAGATGAGACAAAACCAAAGCCAAAATTCATGCCCAATATCTCGGCTCCAAAGATTCCTGAGGGAGATAAAGTGGATTTTGATGACATCCACAGAAAGCGTCAGGAGAAGGATTTATCTGAGCTTCAGTCTCTGATCGAGGCTCATTTCATCCAGAGGAAGAAAGATGAAGAAGAACTGATCGCGCTGGTCAACAGAATCGAGAAGCGGCGCGGCGAGAGGGCAGAGCAGCAGAGAATCCGTGCAGAGAAAGAGAAGGAGAGACAGGCCCGTCTGGCCGAAGAAAAAGAGAGGCGAGAGCAAGAGGAACAGAGGAAGAAACACGATGAAGATGCCAAGAAGAAGAAGGCCCTCACCAACATGACACACCAGTATGGAGGAATCCAGCAGAAGGGCGACGGCCGCAAAGGAGCAAagaaacagacagagagagagaagaagaagaagatcctGGCGGAGAGAAAGAAGCCACTGAACATCGATCATCTTTCTGAAGATAAACTGAAGGAGAAGGCCAGTGAAATGTGGCAGTGGATGATGCAGTTGGAGGCCGAGAAGTTTGACCTCAGCGAGAAACTCAAGAGGCAGAAATATGATATGAATGTTCTCCAGACCCGAATCAATGAACAACAGA
>TCONS_00053393
AAACTGTCTGCTGCACCAACCATCAAGATAAGATCCCTCTCTTTCTCCTTGAGCAGATCTCAGGAGTCAACTAGTCATGGCTGACACAGAAGACGTTGTGGAGGAGGAAGTGCAGGAAGTGgaagTGCCGCCTCCAACAGAGGAAGAGCCAGCCCCTGAAGTGGAAGAGCCTCCGGAAGTCGAAGAGGAGCCAGAACCAGAACCACAAGAAGCCCCGGTTGCGGAGGAAGTCACAGATGAGACAAAACCAAAGCCAAAATTCATGCCCAATATCTCGGCTCCAAAGATTCCTGAGGGAGATAAAGTGGATTTTGATGACATCCACAGAAAGCGTCAGGAGAAGGATTTATCTGAGCTTCAGTCTCTGATCGAGGCTCATTTCATCCAGAGGAAGAAAGATGAAGAAGAACTGATCGCGCTGGTCAACAGAATCGAGAAGCGGCGCGGCGAGAGGGCAGAGCAGCAGAGAATCCGTGCAGAGAAAGAGAAGGAGAGACAGGCCCGTCTGGCCGAAGAAAAAGAGAGGCGAGAGCAAGAGGAACAGAGGAAGAAACACGATGAAGATGCCAAGAAGAAGAAGGCCCTCACCAACATGACACACCAGTATGGAGGAATCCAGCAGAAGGGCGACGGCCGCAAAGGAGCAAagaaacagacagagagagagaagaagaagaagatcctGGCGGAGAGAAAGAAGCCACTGAACATCGATCATCTTTCTGAAGATAAACTGAAGGAGAAGGCCAGTGAAATGTGGCAGTGGATGATGCAGTTGGAGGCCGAGAAGTTTGACCTCAGCGAGAAACTCAAGAGGCAGAAATATGATATCACTCAGCTTCTGGCTCGAGTCCGAGACCACCAGAGTGCCAAAGGTCGTGGCAAGGGCAAGGTTGGCGGCAGGCTGAGGTAAACGCACGGCGGATCCAGGAGCTC
>TCONS_00053394
TCTGCTGCACCAACCATCAAGATAAGATCCCTCTCTTTCTCCTTGAGCAGATCTCAGGAGTCAACTAGTCATGGCTGACACAGAAGACGTTGTGGAGGAGGAAGTGCAGGAAGATGAGACAAAACCAAAGCCAAAATTCATGCCCAATATCTCGGCTCCAAAGATTCCTGAGGGAGATAAAGTGGATTTTGATGACATCCACAGAAAGCGTCAGGAGAAGGATTTATCTGAGCTTCAGTCTCTGATCGAGGCTCATTTCATCCAGAGGAAGAAAGATGAAGAAGAACTGATCGCGCTGGTCAACAGAATCGAGAAGCGGCGCGGCGAGAGGGCAGAGCAGCAGAGAATCCGTGCAGAGAAAGAGAAGGAGAGACAGGCCCGTCTGGCCGAAGAAAAAGAGAGGCGAGAGCAAGAGGAACAGAGGAAGAAACACGATGAAGATGCCAAGAAGAAGAAGGCCCTCACCAACATGACACACCAGTATGGAGGAATCCAGCAGAAGGGCGACGGCCGCAAAGGAGCAAagaaacagacagagagagagaagaagaagaagatcctGGCGGAGAGAAAGAAGCCACTGAACATCGATCATCTTTCTGAAGATAAACTGAAGGAGAAGGCCAGTGAAATGTGGCAGTGGATGATGCAGTTGGAGGCCGAGAAGTTTGACCTCAGCGAGAAACTCAAGAGGCAGAAATATGATATGAATGTTCTCCAGACCCGAATCAATGAACAACAGAAGTTTGCCAAAGGTCGTGGCAAGGGCAAGGTTGGCGGCAGGCTGAGGTAAACGCACGGCGGATCCAGGAGCTCCAGAGATCCAGAAGACTTTATCTGCTtcatcacatacagttgaagtcagagttattagccctcctgaattatttccttcccccctgtatatttttgatttgccccaatttctgtttaacagagagattttatttttaaacataatagttttaataactcatttctgataactggtttcttttatctgtgctatgatgacagtacgtaatatttgactagatgtttcataagatactagtattcagcttcaagtgacatttaaaggcttaactaggctactTAGGCAAGTCGttatttaatgatggtttgttctgtagatggtcgaaaacaaatattgcttaaggggctaataatattgaccttaaaatggtttcaaaaactgcttttattcaagccaaaataaggcaaataagacattctccaggagaaaaaatattataggaaatactatgaaaaatgtcttgctccattaaacatcatttgggaaatatttgaaaaagacaaaGCACAGGTGGGCGAATaatttcgacttcaactgtatgcagaTGTGGTCATGACAGACGCATCGCTCTGCTTTACTGCACTATGGAGACAGAAAAGTTGC
>TCONS_00053395
CCAACCATCAAGATAAGATCCCTCTCTTTCTCCTTGAGCAGATCTCAGGAGTCAACTAGTCATGGCTGACACAGAAGACGTTGTGGAGGAGGAAGTGCAGGAAGTGGAGGAAACCGAAGAGGAAGTGgaagTGCCGCCTCCAACAGAGGAAGAGCCAGCCCCTGAAGTGGAAGAGCCTCCGGAAGTCGAAGAGGAGCCAGAACCAGAACCACAAGAAGCCCCGGTTGCGGAGGAAGTCACAGATGAGACAAAACCAAAGCCAAAATTCATGCCCAATATCTCGGCTCCAAAGATTCCTGAGGGAGATAAAGTGGATTTTGATGACATCCACAGAAAGCGTCAGGAGAAGGATTTATCTGAGCTTCAGTCTCTGATCGAGGCTCATTTCATCCAGAGGAAGAAAGATGAAGAAGAACTGATCGCGCTGGTCAACAGAATCGAGAAGCGGCGCGGCGAGAGGGCAGAGCAGCAGAGAATCCGTGCAGAGAAAGAGAAGGAGAGACAGGCCCGTCTGGCCGAAGAAAAAGAGAGGCGAGAGCAAGAGGAACAGAGGAAGAAACACGATGAAGATGCCAAGAAGAAGAAGGCCCTCACCAACATGACACACCAGTATGGAGGAATCCAGCAGAAGGGCGACGGCCGCAAAGGAGCAAagaaacagacagagagagagaagaagaagaagatcctGGCGGAGAGAAAGAAGCCACTGAACATCGATCATCTTTCTGAAGATAAACTGAAGGAGAAGGCCAGTGAAATGTGGCAGTGGATGATGCAGTTGGAGGCCGAGAAGTTTGACCTCAGCGAGAAACTCAAGAGGCAGAAATATGATATCACTCAGCTTCTGGCTCGAGTCCGAGACCACCAGAGTGCCAAAGGTCGTGGCAAGGGCAAGGTTGGCGGCAGGCTGAGGTAAACGCACGGCGGATCCAGGAGCTCCAGAGATCCAGAAGACTTTATCTGCTtcatcacatacagttgaagtcagagttattagccctcctgaattatttccttcccccctgtatatttttgatttgccccaatttctgtttaacagagagattttatttttaaacataatagttttaataactcatttctgataactggtttcttttatctgtgctatgatgacagtacgtaatatttgactagatgtttcataagatactagtattcagcttcaagtgacatttaaaggcttaactaggctactTAGGCAAGTCGttatttaatgatggtttgttctgtagatggtcgaaaacaaatattgcttaaggggctaataatattgaccttaaaatggtttcaaaaactgcttttattcaagccaaaataag
>TCONS_00053396
CATCAAGATAAGATCCCTCTCTTTCTCCTTGAGCAGATCTCAGGAGTCAACTAGTCATGGCTGACACAGAAGACGTTGTGGAGGAGGAAGTGCAGGAAGAAGCCCCGGTTGCGGAGGAAGTCACAGATGAGACAAAACCAAAGCCAAAATTCATGCCCAATATCTCGGCTCCAAAGATTCCTGAGGGAGATAAAGTGGATTTTGATGACATCCACAGAAAGCGTCAGGAGAAGGATTTATCTGAGCTTCAGTCTCTGATCGAGGCTCATTTCATCCAGAGGAAGAAAGATGAAGAAGAACTGATCGCGCTGGTCAACAGAATCGAGAAGCGGCGCGGCGAGAGGGCAGAGCAGCAGAGAATCCGTGCAGAGAAAGAGAAGGAGAGACAGGCCCGTCTGGCCGAAGAAAAAGAGAGGCGAGAGCAAGAGGAACAGAGGAAGAAACACGATGAAGATGCCAAGAAGAAGAAGGCCCTCACCAACATGACACACCAGTATGGAGGAATCCAGCAGAAGGGCGACGGCCGCAAAGGAGCAAagaaacagacagagagagagaagaagaagaagatcctGGCGGAGAGAAAGAAGCCACTGAACATCGATCATCTTTCTGAAGATAAACTGAAGGAGAAGGCCAGTGAAATGTGGCAGTGGATGATGCAGTTGGAGGCCGAGAAGTTTGACCTCAGCGAGAAACTCAAGAGGCAGAAATATGATATGAATGTTCTCCAGACCCGAATCAATGAACAACAGAAGTTTGCCAAAGGTCGTGGCAAGGGCAAGGTTGGCGGCAGGCTGAGGTAAACGCACGGCGGATCCAGGAGCTCCAGAGATCCAGAAGACTTTATCTGCTtcatcacatacagttgaagtcagagttattagccctcctgaattatttccttcccccctgtatatttttgatttgccccaatttctgtttaacagagagattttatttttaaacataatagttttaataactcatttctgataactggtttcttttatctgtgctatgatgacagtacgtaatatttgactagatgtttcataagatactagtattcagcttcaagtgacatttaaaggcttaactaggctactTAGGCAAGTCGttatttaatgatggtttgttctgtagatggtcgaaaacaaatattgcttaaggggctaataatattgaccttaaaatggtttcaaaaactgcttttattcaagccaaaataaggcaaataagacattctccaggagaaaaaatattataggaaatactatgaaaaatgtcttgctccattaaacatcatttgggaaatatttgaaaaagacaaaGCACAGGTGGGCGAATaatttcgacttcaactgtatgcagaTGTGGTCATGACAGACGCATCGCTCTGCTTTACTGCACTATGGAGACAGAAAAGTTGCATACTCTCTACTGATGTCGTGTATTTCTGCTTGTTATGCACAAGTATTCTGCAGTCCTCTCTATATTGAGCACTCGTTTTATTCCTGCAACATTAAAAGAGTCAGATTGTCTACAA
>TCONS_00053397
TAAGATCCCTCTCTTTCTCCTTGAGCAGATCTCAGGAGTCAACTAGTCATGGCTGACACAGAAGACGTTGTGGAGGAGGAAGTGCAGGAAGATGAGACAAAACCAAAGCCAAAATTCATGCCCAATATCTCGGCTCCAAAGATTCCTGAGGGAGATAAAGTGGATTTTGATGACATCCACAGAAAGCGTCAGGAGAAGGATTTATCTGAGCTTCAGTCTCTGATCGAGGCTCATTTCATCCAGAGGAAGAAAGATGAAGAAGAACTGATCGCGCTGGTCAACAGAATCGAGAAGCGGCGCGGCGAGAGGGCAGAGCAGCAGAGAATCCGTGCAGAGAAAGAGAAGGAGAGACAGGCCCGTCTGGCCGAAGAAAAAGAGAGGCGAGAGCAAGAGGAACAGAGGAAGAAACACGATGAAGATGCCAAGAAGAAGAAGGCCCTCACCAACATGACACACCAGTATGGAGGAATCCAGCAGAAGGGCGACGGCCGCAAAGGAGCAAagaaacagacagagagagagaagaagaagaagatcctGGCGGAGAGAAAGAAGCCACTGAACATCGATCATCTTTCTGAAGATAAACTGAAGGAGAAGGCCAGTGAAATGTGGCAGTGGATGATGCAGTTGGAGGCCGAGAAGTTTGACCTCAGCGAGAAACTCAAGAGGCAGAAATATGATATCACTCAGCTTCTGGCTCGAGTCCGAGACCACCAGAG
>TCONS_00053400
GATGATTCAGATGAAGTTGTGCATGACgatgttcaACAAATGGAGGAAACCGAAGAGGAAGaggTAGTGCCGCCTCCAACAGAGGAAGAGCCAGCCCCTGAAGTGGAAGAGCCTCCGGAAGTCGAAGAGGAGCCAGAACCAGAACCACAAGAAGCCCCGGTTGCGGAGGAAGTCACAGATGAGACAAAACCAAAGCCAAAATTCATGCCCAATATCTCGGCTCCAAAGATTCCTGAGGGAGATAAAGTGGATTTTGATGACATCCACAGAAAGCGTCAGGAGAAGGATTTATCTGAGCTTCAGTCTCTGATCGAGGCTCATTTCATCCAGAGGAAGAAAGATGAAGAAGAACTGATCGCGCTGGTCAACAGAATCGAGAAGCGGCGCGGCGAGAGGGCAGAGCAGCAGAGAATCCGTGCAGAGAAAGAGAAGGAGAGACAGGCCCGTCTGGCCGAAGAAAAAGAGAGGCGAGAGCAAGAGGAACAGAGGAAGAAACACGATGAAGATGCCAAGAAGAAGAAGGCCCTCACCAACATGACACACCAGTATGGAGGAATCCAGCAGAAGGGCGACGGCCGCAAAGGAGCAAagaaacagacagagagagagaagaagaagaagatcctGGCGGAGAGAAAGAAGCCACTGAACATCGATCATCTTTCTGAAGATAAACTGAAGGAGAAGGCCAGTGAAATGTGGCAGTGGATGATGCAGTTGGAGGCCGAGAAGTTTGACCTCAGCGAGAAACTCAAGAGGCAGAAATATGATATCACTCAGCTTCTGGCTCGAGTCCGAGACCACCAGAGTGCCAAAGGTCGTGGCAAGGGCAAGGTTGGCGGCAGGCTGAGGTAA
>TCONS_00053399
GATGATTCAGATGAAGTTGTGCATGACGAAACCGAAGAGGAAGTAGTGCCGCCTCCAACAGAGGAAGAGCCAGCCCCTGAAGTGGAAGAGCCTCCGGAAGTCGAAGAGGAGCCAGAACCAGAACCACAAGAAGCCCCGGTTGCGGAGGAAGTCACAGATGAGACAAAACCAAAGCCAAAATTCATGCCCAATATCTCGGCTCCAAAGATTCCTGAGGGAGATAAAGTGGATTTTGATGACATCCACAGAAAGCGTCAGGAGAAGGATTTATCTGAGCTTCAGTCTCTGATCGAGGCTCATTTCATCCAGAGGAAGAAAGATGAAGAAGAACTGATCGCGCTGGTCAACAGAATCGAGAAGCGGCGCGGCGAGAGGGCAGAGCAGCAGAGAATCCGTGCAGAGAAAGAGAAGGAGAGACAGGCCCGTCTGGCCGAAGAAAAAGAGAGGCGAGAGCAAGAGGAACAGAGGAAGAAACACGATGAAGATGCCAAGAAGAAGAAGGCCCTCACCAACATGACACACCAGTATGGAGGAATCCAGCAGAAGGGCGACGGCCGCAAAGGAGCAAagaaacagacagagagagagaagaagaagaagatcctGGCGGAGAGAAAGAAGCCACTGAACATCGATCATCTTTCTGAAGATAAACTGAAGGAGAAGGCCAGTGAAATGTGGCAGTGGATGATGCAGTTGGAGGCCGAGAAGTTTGACCTCAGCGAGAAACTCAAGAGGCAGAAATATGATATCACTCAGCTTCTGGCTCGAGTCCGAGACCACCAGAGTGCCAAAGGTCGTGGCAAGGGCAAGGTTGGCGGCAGGCTGAGGTAA
>TCONS_00053398
GATGATTCAGATGAAGTTGTGCATGACGAAACCGAAGAGGAAGAAGCCCCGGTTGCGGAGGAAGTCACAGATGAGACAAAACCAAAGCCAAAATTCATGCCCAATATCTCGGCTCCAAAGATTCCTGAGGGAGATAAAGTGGATTTTGATGACATCCACAGAAAGCGTCAGGAGAAGGATTTATCTGAGCTTCAGTCTCTGATCGAGGCTCATTTCATCCAGAGGAAGAAAGATGAAGAAGAACTGATCGCGCTGGTCAACAGAATCGAGAAGCGGCGCGGCGAGAGGGCAGAGCAGCAGAGAATCCGTGCAGAGAAAGAGAAGGAGAGACAGGCCCGTCTGGCCGAAGAAAAAGAGAGGCGAGAGCAAGAGGAACAGAGGAAGAAACACGATGAAGATGCCAAGAAGAAGAAGGCCCTCACCAACATGACACACCAGTATGGAGGAATCCAGCAGAAGGGCGACGGCCGCAAAGGAGCAAagaaacagacagagagagagaagaagaagaagatcctGGCGGAGAGAAAGAAGCCACTGAACATCGATCATCTTTCTGAAGATAAACTGAAGGAGAAGGCCAGTGAAATGTGGCAGTGGATGATGCAGTTGGAGGCCGAGAAGTTTGACCTCAGCGAGAAACTCAAGAGGCAGAAATATGATATGAATGTTCTCCAGACCCGAATCAATGAACAACAGAAGTTTGCCAAAGGTCGTGGCAAGGGCAAGGTTGGCGGCAGGCTGAGGTAA

Function

symbol description
tnnt2e Predicted to enable tropomyosin binding activity; troponin C binding activity; and troponin I binding activity. Predicted to be involved in muscle contraction and sarcomere organization. Predicted to act upstream of or within regulation of muscle contraction. Predicted to be part of troponin complex. Human ortholog(s) of this gene implicated in intrinsic cardiomyopathy (multiple). Orthologous to human TNNT2 (troponin T2, cardiac type).

GO:

id name namespace
GO:0006936 muscle contraction biological_process
GO:0006937 regulation of muscle contraction biological_process
GO:0045214 sarcomere organization biological_process
GO:0005861 troponin complex cellular_component
GO:0005523 tropomyosin binding molecular_function
GO:0030172 troponin C binding molecular_function
GO:0031013 troponin I binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041210-27 Predicted to enable tropomyosin binding activity; troponin C binding activity; and troponin I binding activity. Predicted to be involved in muscle contraction and sarcomere organization. Predicted to act upstream of or within regulation of muscle contraction. Predicted to be part of troponin complex. Human ortholog(s) of this gene implicated in intrinsic cardiomyopathy (multiple). Orthologous to human TNNT2 (troponin T2, cardiac type).

Ensembl:

ensembl_id ENSDARG00000045822

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053392 False 888 mRNA 0.50 18 7508316 7538138
TCONS_00053393 False 936 mRNA 0.52 18 7508317 7543967
TCONS_00053394 False 1420 mRNA 0.43 12 7508323 7544571
TCONS_00053395 False 1346 mRNA 0.46 19 7508332 7544371
TCONS_00053396 False 1549 mRNA 0.43 13 7508337 7544687
TCONS_00053397 False 722 mRNA 0.49 11 7508345 7538377
TCONS_00053400 False 855 mRNA 0.51 18 7514687 7543944
TCONS_00053399 False 834 mRNA 0.51 16 7514687 7543944
TCONS_00053398 True 750 mRNA 0.49 12 7514687 7543944

Neighbor

gene id symbol gene type direction distance location
XLOC_027085 NA coding upstream 1846 7415280 ~ 7506470 (+)
XLOC_027084 tnni4a coding upstream 99003 7391110 ~ 7409313 (+)
XLOC_027083 FO681358.1 coding upstream 344442 7163758 ~ 7163874 (+)
XLOC_027082 NA coding upstream 396294 7111729 ~ 7112022 (+)
XLOC_027081 FO681360.1 coding upstream 483033 7025167 ~ 7025283 (+)
XLOC_027087 NA coding downstream 973 7545660 ~ 7595697 (+)
XLOC_027088 NA coding downstream 107887 7652574 ~ 7666746 (+)
XLOC_027089 elk3 coding downstream 132631 7677318 ~ 7713665 (+)
XLOC_027090 NA coding downstream 170914 7715601 ~ 7717659 (+)
XLOC_027091 si:ch1073-67j19.1 coding downstream 273309 7817996 ~ 7821466 (+)
XLOC_027080 NA non-coding upstream 488294 7005809 ~ 7020022 (+)
XLOC_027098 NA non-coding downstream 500755 8045442 ~ 8049258 (+)
XLOC_027099 CU695020.2 non-coding downstream 589907 8134594 ~ 8134710 (+)

Expression


Co-expression Network