XLOC_027088



Basic Information


Item Value
gene id XLOC_027088
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 7652574 ~ 7666746 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00057610
CAGCAGATGACAGCTTAGTAACAGCCTCATAATGTCAGTCAACAGCACATATTACAACCCGACAGCGAACACAAGGTGCTCTAACGTGCAGAAACGAAGAGTAACGCGACTCACCTGTGACTTTCTTTCGGCGTGAAGAAGCGCTGCTGAATGACAGTGAGGGCGGATCTGCAGCAGCGAAGACACtcgtgtgtctgttgtgtttcaGCTGCACAGCTTTCACCTGACACCTTTGTCCACATCCAGGCGGATTCAAAGCATCAGGAAAGATATGGATTTTTGACAGACAGATTCGTTGGAATCCAACAGAACGAGGACGAAACACTGAC

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00057610 True 329 lncRNA 0.49 3 7652574 7666746

Neighbor


gene id symbol gene type direction distance location
XLOC_027087 NA coding upstream 56877 7545660 ~ 7595697 (+)
XLOC_027086 tnnt2e coding upstream 107887 7508316 ~ 7544687 (+)
XLOC_027085 NA coding upstream 146104 7415280 ~ 7506470 (+)
XLOC_027084 tnni4a coding upstream 243261 7391110 ~ 7409313 (+)
XLOC_027083 FO681358.1 coding upstream 488700 7163758 ~ 7163874 (+)
XLOC_027089 elk3 coding downstream 10572 7677318 ~ 7713665 (+)
XLOC_027090 NA coding downstream 48855 7715601 ~ 7717659 (+)
XLOC_027091 si:ch1073-67j19.1 coding downstream 151250 7817996 ~ 7821466 (+)
XLOC_027092 si:ch1073-67j19.2 coding downstream 156027 7822773 ~ 7826304 (+)
XLOC_027093 phyh coding downstream 160515 7827261 ~ 7836413 (+)
XLOC_027082 NA non-coding upstream 540552 7111729 ~ 7112022 (+)
XLOC_027081 FO681360.1 non-coding upstream 627291 7025167 ~ 7025283 (+)
XLOC_027098 NA non-coding downstream 378696 8045442 ~ 8049258 (+)
XLOC_027099 CU695020.2 non-coding downstream 467848 8134594 ~ 8134710 (+)
XLOC_027102 BX649324.3 non-coding downstream 836941 8503687 ~ 8503801 (+)
XLOC_027105 NA non-coding downstream 1049379 8716125 ~ 8726451 (+)

Expression



Co-expression Network