XLOC_027089 (elk3)


Basic Information

Item Value
gene id XLOC_027089
gene name elk3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 7677318 ~ 7713665 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053402
GTCAGTGCGCTCCTCTCGCTGCAGATTCGGGTTACAGTATAGCCtatgctgagtgtgtgtgtatgtgtgtgtgcgtccgCATCCGCGTGTGTGCTCGTGTTCCTGAATGTCGGATGGTGGCTAGAGGAGGAAAAGCGTGTTTACACAGACGGGCCGAGCGCCTGGGGAATCGCGCACGGCGAGAGGAAGTGAGCCGGCTCGCTGTCTGCCTGCTGCAACTTCCTgctcacagagagagagagagaaagagtgagtgagtgagagagagagagaaaacagtcGGGATCCCATTACAGTCCGACTGAGAGCTGCCGAGACGGCCGACAGCATGGAAAAACAGCGCATTATACGGAATTCTTATTAATAAAGTGAAAAGGGAGCCCGAGCATTACGCAGAGATATGGAGAGTGCTATCACGCTGTGGCAGTTTCTGCTGCAGTTACTGCTGGATCAGAGCCATAAGCACCTGATTTGCTGGACGTCCAACGACGGCGAGTTCAAGCTGCTGAAGTCAGAAGAAGTCGCCAAACTCTGGGGCCTGCGCAAAAACAAGACCAACATGAACTACGACAAACTTAGCCGAGCGCTACGCTACTACTATGACAAGAACATCATCAAGAAGGTGATTGGTCAGAAGTTTGTGTACAAGTTCGTCTCATTCCCTGATATCCTGAAGATGGATCCCCAAGCAGTGGAGCTCGGTCGGGATGGGGGTCACGTCGCAGGGGGCGTCATGTTACAGGATGTGGAGTCAGACTGCGGCGAGGGGGAGGAGTCTCCAAAACTGTCGCTGTCTTCGCTGCGAAGCCCCGCCTGTAGGAACGAGTATCTTCACTCGGGTCTGTACTCGTCTTTCACAGTCAGCTCCCTTCAAAACCCGCCTCCACTGCTGCGTCCAATCAAAGTCGAGAACCAGCGAGGGTGCGAGCGAGGGGAGGAGGGACAAACGGTGATTCGATTCGTCACTAATCGATCAGAGAAAGCCATTCCCCTTGCTTCCTCGCCTCCCCCTTCATCCGGAGAAGTCTTCTTCACTTCCAAATCCTCCCCGTGCTCTTCCCGAAGCCCCTCTCCTTCCCATAGCCCTGTCTACACGCTGCGACATGGGCAGAGCCCAGAGGCTCGCATAGACGAATCAGAGCCCAGCGCTCAGCCTTTAAATTTATCTTCCAGCCACAGGGAGCGAGCCCAGAATCAGGCTTCGCCCCTCGAGAGGAGGACCAGTAGCAACAGACTGCCTCCGAAAGCCCGGAAACCCAAAGGGCTGGAAATCTCCGCCCCTTCAATACTGCTTTCAGGAAGTGACTTGGGCTCCATCGCCCTCAACAGCCCAGCACTGCCCTCAGGGTCCCTTACGCCAGCCTTTTTCACTGCACAGaCTCCCTCCGGTTTGCTGTTGACGCCCAGTCCTCTCCTGTCCTCCATTCATTTCTGGAGCAGCCTGAGTCCCGTGGCCCCCCTCAGCCCCGCCAGACTACAGGGACACAGCTCACTCTTTCAGTTCCCCTCCCTGCTGAACGGCCCACTTCCAGTTCCCCTGCCAAACCTGGACTctccttcatcctcctcctcctcctcatcatcctcTTCCTCTCTCCTCTTGTCCTCCAGCGGGCAGAAATCCTGAttcctgcacacacaaacacacacacacacatacaaacacagacTTGTTCCTATATCCCAGTGGGGACTCTCACAGACCTAATGATGTTTATGTTTATGACTATACAAACCGTATATTCTCTcatctacccctaaacccaaccctcacaataCTTCATTCTGTGCGATTTACAAGCACGTTTACCTATCGTTTGGTCCACACAGTGACTATGAGTCAGTTTTAGATCACTTTTATATCCCCGCTGGGATATaaacacaagtacacacacacacacacctacactaaAGCAGGACTGAAGGATGGAGCTTGATGTTTTGTGTTGAGCCAGACTGCACTTCTCCCCCTTGTGGCCACTTCAGTCACTGCAGCCTGCACTTCAGGACacagtgtgtttattttttctgcaATTCAAAAAAGCAAGCTCTTAAAGACAGGATTATTATGAGGTGAAGCCAAAGAACATCAAGTGTCCTTTTGAGAAGACTTTGAGTCATTGGAAACGGAGCCGCAGAGCCTCTTTGAATGGAGAAACGGACATTTAAGGCAAGTTATAATTCAAAAGCCTCTTCTGATGGGAGAAGCGATGCTGGACGATGTGTTTTATTCAGCAGACCTCCATTAAAATTGACGCTAAATTACAAGCGGTAA
>TCONS_00053403
TGTCCCTTGAGAGACTGATGCACTGTTTGTGTTAATAATTTTACCTCTCTCGTCTGGCAGATATGGAGAGTGCTATCACGCTGTGGCAGTTTCTGCTGCAGTTACTGCTGGATCAGAGCCATAAGCACCTGATTTGCTGGACGTCCAACGACGGCGAGTTCAAGCTGCTGAAGTCAGAAGAAGTCGCCAAACTCTGGGGCCTGCGCAAAAACAAGACCAACATGAACTACGACAAACTTAGCCGAGCGCTACGCTACTACTATGACAAGAACATCATCAAGAAGGTGATTGGTCAGAAGTTTGTGTACAAGTTCGTCTCATTCCCTGATATCCTGAAGATGGATCCCCAAGCAGTGGAGCTCGGTCGGGATGGGGGTCACGTCGCAGGGGGCGTCATGTTACAGGATGTGGAGTCAGACTGCGGCGAGGGGGAGGAGTCTCCAAAACTGTCGCTGTCTTCGCTGCGAAGCCCCGCCTGTAGGAACGAGTATCTTCACTCGGGTCTGTACTCGTCTTTCACAGTCAGCTCCCTTCAAAACCCGCCTCCACTGCTGCGTCCAATCAAAGTCGAGAACCAGCGAGGGTGCGAGCGAGGGGAGGAGGGACAAACGGTGATTCGATTCGTCACTAATCGATCAGAGAAAGCCATTCCCCTTGCTTCCTCGCCTCCCCCTTCATCCGGAGAAGTCTTCTTCACTTCCAAATCCTCCCCGTGCTCTTCCCGAAGCCCCTCTCCTTCCCATAGCCCTGTCTACACGCTGCGACATGGGCAGAGCCCAGAGGCTCGCATAGACGAATCAGAGCCCAGCGCTCAGCCTTTAAATTTATCTTCCAGCCACAGGGAGCGAGCCCAGAATCAGGCTTCGCCCCTCGAGAGGAGGACCAGTAGCAACAGACTGCCTCCGAAAGCCCGGAAACCCAAAGGGCTGGAAATCTCCGCCCCTTCAATACTGCTTTCAGGAAGTGACTTGGGCTCCATCGCCCTCAACAGCCCAGCACTGCCCTCAGGGTCCCTTACGCCAGCCTTTTTCACTGCACAGaCTCCCTCCGGTTTGCTGTTGACGCCCAGTCCTCTCCTGTCCTCCATTCATTTCTGGAGCAGCCTGAGTCCCGTGGCCCCCCTCAGCCCCGCCAGACTACAGGGACACAGCTCACTCTTTCAGTTCCCCTCCCTGCTGAACGGCCCACTTCCAGTTCCCCTGCCAAACCTGGACTctccttcatcctcctcctcctcctcatcatcctcTTCCTCTCTCCTCTTGTCCTCCAGCGGGCAGAAATCCTGAttcctgcacacacaaacacacacacacacatacaaacacagacTTGTTCCTATATCCCAGTGGGGACTCTCACA

Function

symbol description
elk3 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in vascular endothelium. Orthologous to human ELK3 (ETS transcription factor ELK3).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-030716-2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in vascular endothelium. Orthologous to human ELK3 (ETS transcription factor ELK3).

Ensembl:

ensembl_id ENSDARG00000018688

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053402 False 2275 mRNA 0.52 5 7677318 7713665
TCONS_00053403 True 1363 mRNA 0.55 4 7698862 7713091

Neighbor

gene id symbol gene type direction distance location
XLOC_027088 NA coding upstream 10572 7652574 ~ 7666746 (+)
XLOC_027087 NA coding upstream 81621 7545660 ~ 7595697 (+)
XLOC_027086 tnnt2e coding upstream 132631 7508316 ~ 7544687 (+)
XLOC_027085 NA coding upstream 170848 7415280 ~ 7506470 (+)
XLOC_027084 tnni4a coding upstream 268005 7391110 ~ 7409313 (+)
XLOC_027090 NA coding downstream 1936 7715601 ~ 7717659 (+)
XLOC_027091 si:ch1073-67j19.1 coding downstream 104331 7817996 ~ 7821466 (+)
XLOC_027092 si:ch1073-67j19.2 coding downstream 109108 7822773 ~ 7826304 (+)
XLOC_027093 phyh coding downstream 113596 7827261 ~ 7836413 (+)
XLOC_027094 ucmaa coding downstream 127962 7841627 ~ 7850489 (+)
XLOC_027083 FO681358.1 non-coding upstream 513444 7163758 ~ 7163874 (+)
XLOC_027082 NA non-coding upstream 565296 7111729 ~ 7112022 (+)
XLOC_027098 NA non-coding downstream 331777 8045442 ~ 8049258 (+)
XLOC_027099 CU695020.2 non-coding downstream 420929 8134594 ~ 8134710 (+)
XLOC_027102 BX649324.3 non-coding downstream 790022 8503687 ~ 8503801 (+)
XLOC_027105 NA non-coding downstream 1002460 8716125 ~ 8726451 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000335_01109924_01114152 ELK3 coding CI01000335 null 1109924 ~ 1114152 (+)