XLOC_027090


Basic Information

Item Value
gene id XLOC_027090
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 7715601 ~ 7717659 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057611
ACAGACAGCAGAGAGTTGACTGTATGAAACAGACCATGTTTACTTCACTGATTAAGAGAAATAAATATCTGCAGTACAAAGAGTTAACGGTCAATTGAGCCGACAGACTGACCCGAGAGCGTCAGTGTTTCACAGAGCGGAGCTTACaagacaaacacactcacacacactcactctcacactcactcacacactcctGAAACAATCCACTCCCATTTcacaatattaataatcaacatctgtcagttcaaaacaaaaacaagtcgTCATCTAAACTCTGATGTCCTCTTCATCTTTATAAATGCTGGAGAGAGAGAAACATTGGTCCAACGCTGCTGTCAGAGTCTTTGTTTTTTATCCTTTTTGTCGTTGTTACTTTTTCTTTTATACACACAACATCGTAGATCTCTTCTGAATAAAATCAAGCACAAATGTGGGACAGTCGGACTCCAACATGCCACACTGAGATACCATTATTCACAGAAGGGTCAATAATAtgtaacatttaaacaaaaatctcGTAATACTGTTAATGAAACTAGCTCATCTTCAACAGGCTCTGTACAGTTACTGATCTCCATCATCACACACATACGCTCTTTTACAAGCAGCGCACACTCGCCAAGCTCTGTTAAAGAGACAGttcacctcaaACAATTATAATCGGAAACTAAATCAATCCATTTTTGCTCAGTTTACTTAAGAACAAAAAGGAggatttttgaagaatgttggaaactggtggTCATAGATACAAATGACATACCATGGAATTCAGCAGTttggaacattcttcaaaatatcttctttccatTTTGTTCACAGTTTACTTGAGTTTCCTTGAGaacaaaaaggaaataaaattgaaaaatgctgaaaaccgggAGTCATAGATGCAAATGAAACACTATGGAATTCAACCGTttggaacattcttcaaaatatcttcttttgagaaGAAACGGATGGTGACTGAATCGGTTTTTGTGTGAACGGTTCCTTTTAATAGGAGGAAAGTCATTTGATGAGCTTCAAttgtaaaataaagtataaaaa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057611 True 1056 lncRNA 0.37 2 7715601 7717659

Neighbor

gene id symbol gene type direction distance location
XLOC_027089 elk3 coding upstream 1936 7677318 ~ 7713665 (+)
XLOC_027088 NA coding upstream 48855 7652574 ~ 7666746 (+)
XLOC_027087 NA coding upstream 119904 7545660 ~ 7595697 (+)
XLOC_027086 tnnt2e coding upstream 170914 7508316 ~ 7544687 (+)
XLOC_027085 NA coding upstream 209131 7415280 ~ 7506470 (+)
XLOC_027091 si:ch1073-67j19.1 coding downstream 100337 7817996 ~ 7821466 (+)
XLOC_027092 si:ch1073-67j19.2 coding downstream 105114 7822773 ~ 7826304 (+)
XLOC_027093 phyh coding downstream 109602 7827261 ~ 7836413 (+)
XLOC_027094 ucmaa coding downstream 123968 7841627 ~ 7850489 (+)
XLOC_027095 cdc123 coding downstream 158538 7876197 ~ 7883731 (+)
XLOC_027083 FO681358.1 non-coding upstream 551727 7163758 ~ 7163874 (+)
XLOC_027082 NA non-coding upstream 603579 7111729 ~ 7112022 (+)
XLOC_027098 NA non-coding downstream 327783 8045442 ~ 8049258 (+)
XLOC_027099 CU695020.2 non-coding downstream 416935 8134594 ~ 8134710 (+)
XLOC_027102 BX649324.3 non-coding downstream 786028 8503687 ~ 8503801 (+)
XLOC_027105 NA non-coding downstream 998466 8716125 ~ 8726451 (+)
XLOC_027107 NA non-coding downstream 1156906 8874565 ~ 8885723 (+)

Expression


Co-expression Network