XLOC_027092 (si:ch1073-67j19.2)


Basic Information

Item Value
gene id XLOC_027092
gene name si:ch1073-67j19.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 7822773 ~ 7826304 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053405
TGTATCAAACAGAGAATCAGGAAGTAAgagaattaaaaatatatgtatcaaGGCATGAGAAGGATAAAGACTGTGGCCATACTCTACTTTTGCATCCTAAACTTCAGGTACACGCACTGTAGCTCTCCCAGTGATAGTTTGGAAGTTACATCTGTGGAGGATGTTTATGACTACCTATGGGAGAACAATAAAGACATCGCCGCAAAGACGCTCCATCTGGACTTTCTGAGGCAAATGGAGAACGGCACCCTGCAGGCGGAGCGATACGTCAACTTTACCATGCAAGACCTAAACTACGCACTGAAAGTTGGCGATATGTTGAAGAAAATGAGTGCAAACGAATCTCTCCCCATTGACATCAAGAAGCTACTAGAAGGCAGATACGCAAGCTACAGAAAACTGAGCGACTTCATGATGAAAATCTATTGGTTTGAGGCTGAGCCTCAAATTCAGCAAACTCCAGCCATGAGAAAGTATCTGTCGACCTACACAAACCTCATGCTAGCTGAAGAGCCAGTGTATTTTGTAGTGGGTCTTGTGCCATGTGCTAGACTTTGGGGTTGGTTGGCTAATAACCTGAACATTCCTCCAACCAATGCCTACTTCACCTGGAAGGTGGGCAATATGGGCGGCAATCATGAGAAACACTATAAAGCTCTGCTGAACAAGTATCTGAACACAGCTGATAGAGTGGCGAAGGCTAATGCTGTGTTTCATGCTCAGATGCAGAACGAGCATGATTTCTTCTTAACGTCTTAAGTGGCTGCTGTTGCTTGCAAATGCTTATAACATAAGAACTTTTAGACCTTGCATTTGATTTTGTCAAGACCATGCAGTCAATATACTTATACACTGTAAACAGTGATTatagttacttaaagcgagtaaaccaattgccttaaaaccaacaagttgactttaaaaaaataatgtaagtaaacctattgtaacttggaactgttaagttaaatgtttataattatgcTGATTGTATTCACTTTTGTAAAGTCAAATaatcttttttacagtgtcagactattttagcatGTCTGTTTTTAAGTAATTACTGCAATTGTTACAATATTTGGTGCTGCAACAggtctataaaatctacaattatagtTTGTATTGAGTTTAAAAGAAACAttggagtctggaagagcagatttattttagttactgtcattTTGCTACATACAGAAAAGCTGAGGGAAGAAaaactaatataataaatgtgtattgaCAAAGTGATtaactttcattttttaaaagtgagtACAATTTGCACAATAaaaaagtcaacttaacagttccatgTTACAATGGGTTTACATTATTGTTGTTAAGTCAACTTGTTTCTTTTAGGGCAATTGGTTAACTCGATTTTAGAAACTAATCCCTTTTTTACAGTTGTCCCTTTTTACGACTGCTAAAGAGATATTATTTAGTGCCAACATTTCATGATAAAATAGCGAATTACTTATATGCGCACTTGATTTAGTTAGCCTGATGGATATGCAATAACATATTTAATAGTGAATtgataatgataattaaataaatacttaattacTAATTTAATATGTTAAACAACCCTAATCCTACCTTCATCCATCATGAAAATATACCCACaaccaaaatgacaaaaaatttaaCATGCTTAAAAAGatttgtttgtaaataaactgttggCATTTTAGTAGTCGTTTTTAAATTATGGTAAAAATCTGATAGTCAACAATCTCTGCTAATAAAATACCTAAATTTAACAGGACATGTTGtaatatatgatttttaaaaaataaataaagcagtattACTC

Function

symbol description
si:ch1073-67j19.2 Predicted to be active in cytosol.

GO:

id name namespace
GO:0005829 cytosol cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-141216-263 Predicted to be active in cytosol.

Ensembl:

ensembl_id ENSDARG00000104976

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053405 True 1822 mRNA 0.35 3 7822773 7826304

Neighbor

gene id symbol gene type direction distance location
XLOC_027091 si:ch1073-67j19.1 coding upstream 1307 7817996 ~ 7821466 (+)
XLOC_027090 NA coding upstream 105114 7715601 ~ 7717659 (+)
XLOC_027089 elk3 coding upstream 109108 7677318 ~ 7713665 (+)
XLOC_027088 NA coding upstream 156027 7652574 ~ 7666746 (+)
XLOC_027087 NA coding upstream 227076 7545660 ~ 7595697 (+)
XLOC_027093 phyh coding downstream 957 7827261 ~ 7836413 (+)
XLOC_027094 ucmaa coding downstream 15323 7841627 ~ 7850489 (+)
XLOC_027095 cdc123 coding downstream 49893 7876197 ~ 7883731 (+)
XLOC_027096 camk1da coding downstream 61743 7888047 ~ 7983016 (+)
XLOC_027097 optn coding downstream 190153 8016457 ~ 8027318 (+)
XLOC_027085 NA non-coding upstream 316303 7415280 ~ 7506470 (+)
XLOC_027083 FO681358.1 non-coding upstream 658899 7163758 ~ 7163874 (+)
XLOC_027098 NA non-coding downstream 219138 8045442 ~ 8049258 (+)
XLOC_027099 CU695020.2 non-coding downstream 308290 8134594 ~ 8134710 (+)
XLOC_027102 BX649324.3 non-coding downstream 677383 8503687 ~ 8503801 (+)
XLOC_027105 NA non-coding downstream 889821 8716125 ~ 8726451 (+)
XLOC_027107 NA non-coding downstream 1048261 8874565 ~ 8885723 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01160423_00000575_00000782 NA coding CI01160423 null 315 ~ 782 (-)