G798569 (LOC106571879)


Basic Information

Item Value
gene id G798569
gene name LOC106571879
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 35915737 ~ 35919753 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU908811
TGGACATGTGCTGGCTCAAGATGGGGCAGGTTGATGCTGTGCACTTCAGTAGAACTACATATTCCAGAAAGGTTCTGTCAGTCAAGTGGAGACTTGGGTAAAACAACACTTTGTATGTATAGTTAGTGCCCAAAGATATCACATCTGTACATTATCATAATTATATCCACAATGCCAGCCTTCAATTAGATGCACCTAAGCAAATCTCATAGCAGTAATATTTACAACTTGGACATACAAGTCTTAATGGGTCTGTTGGATAACACACGGCAGTTCATACATGATTGCACTGCTGAAGCAGTAGCAGCCTGTTGGGAAACAATGCAGTAGAAAGACCCCGCAGTTTTCCCTGGTGGACATTCCAGGCCTTTGCAGCTCCAGCATCTGTTAGGGCAGGGGGTTCAGGGGAAAGACCATTGAGACACTTGAAGACAAGCTTCACATTTGAAAAATCAGATGAAGTGTTCAAAGCTCAGTACATTGTACAGGATGTGTCCAGGATTTTCAGCGCACGGCTCTAGTGAcaattctttaacttagatttttggttgaggtggagacgtgaatccaacaagttattaatttgtagacaaactggatatTGAAATGCATTtggcaaccaaatatcaacatttgaagaatGTGTACCTTGGACAGTTCCatttacttttgtaatacagtatatAGCAATAAGGCTAATGTAACAGTACTTATTCTACCTTAAAATAAGTAACAGATCCATGGCCACATTCTGAGGTTAGCCTACTGGAACTATAAATGTCTTGTGTAATTATAGAaagtgtgcatgttcaagatagcatgcaaaggtcatcacaggtctgtggagatcttcacaattgctataaTAATCTGTGTAAAATCTCAAAcaacattgatcattgacactatGTACTTTTAATATAATCTGAACTGCAATCCAGGTAATTTGGTTATggtattagatgaagcacagtgaaaTATTATTGATCAACGTCTTACCCAAATATTACCCATATTTCCACGTTGAAATTATGTGGTGTGCCCAGTGAGTTAGTGATCATCAAGCTCAGGTAGTATTTACATCACACATTGTCCATGATGGTTCTATCACCTTTATACTTCCTGGGTGGACTTTTTGTGTTCTTCACTTGTGATCTGGGGACTTTGGTCCTGTTCATCATCATTTTCTTTCTTTGACTTCTGTTCCAGACTTAACTGTGTGAGTCTCCCTAGGTTTCTTACTTGCCTGTagagaacagaggaacagagcaCAGAGGGAATAAGATAATTAAAGGATGGATTCCCTCCTTTTGCCCTCCCAAGTGAGTTGCACCGCCTTCTGTTCATCTTACTATCTTAGGTCTTGTTGTTCTTGTTTTACtctgcttttgtcacttccattTTTTTCTCTTCACATTCTTTTGCTACTTtatttcttcttctttctctgcTCATTAGAATGTATAGTTGGGTCTGGCACACTGTTTTCTCCAGGCTCATCCCCCTTATTGTTCGGTGTAGAAGTGGCCTGAATTTCTCCAGATTCTGCGGGTGTTTCTGATAGCTCTGTTCCACTTTCAGGCAGGCGTTGTCATCCAGCACAGACtagctatactgtacatctcctCTATGTAATTCAAGTTCTCTTCAGTGGCTGGAATGCATTTTGGGCTcagtgcaggcttttgttccggCTCGTCTTGACGCTGTCCATTGCACTAATAATATTTTGACCCAGTGTGGACCCATCTTTGCAGAGCGCGGTCTGGGTTCGGTCTGGGTCTGCTTCAATGTAAACAAAGCGCTCTCCATTGGAACAGTTAGTGAGTTGGTTCTTGCATCGAATCATGCGTTTCATAACTTTCCCCAGTCTTGCAGCCTGCTTTGGTCAGAAACTCTGTCATCTGCTGATTCAGGCAGCTCTTTGATTGTACCTTGAACTGAGTTCTGATTGGCCATGCGTGACTTCAGACTGACAGGGTTGTTTTCCTTGAACAGTACATGCTTTCCACAGACATATATTCCTCCAATAAGGAGTTGCCCTTGCCTCCTATTTACTTAGATACGCCAGAGTGCACTCTCTGTACCAACCTCAAGTGGCTTGGGTGGATTCCCTGTATGCTATGGTTGAGCTATACTTCCTTCAGGGGGTTAGCTCTGGCCTCCTCCCTTGTAAGGATTTTTCTCTCCAAGATGAAGATAGGGTGAACCGTTTCCTTTGGTGTGTTGCGCCCGGCAACTGTACTTCAAGCCTCCTTTTCTTTAACATTTCCCTTAATGCTGCTTGATGTGGCAGCCCCCATGCACTCTGCCATGTCAACTTGTTCTGATTTCACTATATTATGTCAAAAATCACATATAATCAAAACAAAATAATTAGGCAAGATTGTTCAGAGTAATGTAGTGAATTTAAATCTTGTTGTATTAACAGAGGGTGGTTGATTTTGTAGGAGATATTCCCCAGATTAAGGTGTCTCCTTTGTTCAGGCAAACCCACAACGGTAAGGCTGATGTGTGCGGCTTCATGGTCAGGTTCAAACAGTGCACTCAGTACACAAAGAACAAACTGTGGCCCTATGTGGGATGTACCCAGACGACCATATTTACTTAGCTTAGCGAATCAAGTGGTAaggtatcttagtggtgaagtGTTACCCCCTATTGACTTGATAGGCATAAATGTTCGTTGTCTCTGTTTGGGTCACTACACCACCCATGTCTCATGTTACAGtcatgacaacaaaaaaaaacctggccTGTATAAAAGGTCAAACCTGAGATGCCCTGCCTCATCACCACGGTGGCCCGCTGAGTGACTCCTCCTGCAAAGTGCTTGGCTCTGTCCTCTCTTAATTGGTTGACAGTGGCGACACATGCCTGCTTAGTGTCCTCTCTGACCTCACTTTCTGCGACAATTTCAGTTTTGGACCCTCTTCTTCCTGTGGGTGCGTCCGTGGCAACTCACCTTGTGAGTTAGTTGTCGTGCCAACCAAAGCGACAATGTTTTGGAGAGGAGTCTGAGCCAGCAGTGCCAGCTGCCAATCACATTGTTCCTTCCTCTAGCCATCCCGCCCAGCTCTCGTATCAGTCCCCCAAAATCCCGAGGCAGGCAGTAGCGCGGGACACCTCTGAGGTCTTTGGGGATGTCTCGGCTGTGACAGAGGTCCTGGAAGTAGACAAGGGCAAAGCCGTGGCTCTTGCCTGTCCCCTGTAGTGCCCCCtgcagacaggacagggcagcCCTGAACACCGGCCCCGTCACTGAGGAgggctccctctcctcctctccgctcctACCTTCCTCTTTCCATTCCACTCCTTTCTCCATTCCTGCTTGCTCCTGTATATCTCTTGTTAACTCAAGTCCTTtcagctcctctcctccactctccccttGTCgcatctcctctcctttactccctCCTATCTTTTTCTCATCTCTCCTATTCCCTCCATCTCGCTCTTCTCTCCAGCTCTTGTAGGACTCCTTAGCCTCTGGGCTCCATATGATCAGCACCCGGCCTCCTGCCTCTCTGACTGCCTCCCACTGTCCATACATCCAGGGCACAGGGCCCAGCTCAGCCACACCAGCCCCAGACCTCTCCATAGCCCCAGGACCATCCCCATTGGAGATCTGGGCCCACAGAGCCATGCGCACGTCAGCACACAGCTCTCCCTGTAGAATGGAGGCCAAAGCACACACGGGAGACACATGGGTTGACAGCTCTGAGGAACACACCAACAACACAGGCCTCTGGAT
>TU908810
CTTTCATCAGAGTGATGAAGTGTACCCTCACCTGTGGTGAGGGTACACATCAAGGACATTCAGTTTCATACAATAATAGTTTAGTTTATTTGAATGGGGACAAACACATTGACACAATGAACAAACAATCGTCCGATGCATTGCACTAGTGTGTCTAGCTCAAGCTCATTTTCCACACCCGTCCCAAAATAGACTTTAATGAAAAGAAATATGTAATCAATAAAAATATCACATCTGTACATTATCATAATTATATCCACAATGCCAGCCTTCAATTAGATGCACCTAAGCAAATCTCATAGCAGTAATATTTACAACTTGGACATACAAGTCTTAATGGGTCTGTTGGATAACACACGGCAGTTCATACATGATTGCACTGCTGAAGCAGTAGCAGCCTGTTGGGAAACAATGCAGTAGAAAGACCCCGCAGTTTTCCCTGGTGGACATTCCAGGCCTTTGCAGCTCCAGCATCTGTTAGGGCAGGGGGTTCAGGGGAAAGACCATTGAGACACTTGAAGACAAGCTTCACATTTGAAAAATCAGATGAAGTGTTCAAAGCTCAGTACATTGTACAGGATGTGTCCAGGATTTTCAGCGCACGGCTCTAGTGAcaattctttaacttagatttttggttgaggtggagacgtgaatccaacaagttattaatttgtagacaaactggatatTGAAATGCATTtggcaaccaaatatcaacatttgaagaatGTGTACCTTGGACAGTTCCatttacttttgtaatacagtatatAGCAATAAGGCTAATGTAACAGTACTTATTCTACCTTAAAATAAGTAACAGATCCATGGCCACATTCTGAGGTTAGCCTACTGGAACTATAAATGTCTTGTGTAATTATAGAaagtgtgcatgttcaagatagcatgcaaaggtcatcacaggtctgtggagatcttcacaattgctataaTAATCTGTGTAAAATCTCAAAcaacattgatcattgacactatGTACTTTTAATATAATCTGAACTGCAATCCAGGTAATTTGGTTATggtattagatgaagcacagtgaaaTATTATTGATCAACGTCTTACCCAAATATTACCCATATTTCCACGTTGAAATTATGTGGTGTGCCCAGTGAGTTAGTGATCATCAAGCTCAGGTAGTATTTACATCACACATTGTCCATGATGGTTCTATCACCTTTATACTTCCTGGGTGGACTTTTTGTGTTCTTCACTTGTGATCTGGGGACTTTGGTCCTGTTCATCATCATTTTCTTTCTTTGACTTCTGTTCCAGACTTAACTGTGTGAGTCTCCCTAGGTTTCTTACTTGCCTGTagagaacagaggaacagagcaCAGAGGGAATAAGATAATTAAAGGATGGATTCCCTCCTTTTGCCCTCCCAAGTGAGTTGCACCGCCTTCTGTTCATCTTACTATCTTAGGTCTTGTTGTTCTTGTTTTACtctgcttttgtcacttccattTTTTTCTCTTCACATTCTTTTGCTACTTtatttcttcttctttctctgcTCATTAGAATGTATAGTTGGGTCTGGCACACTGTTTTCTCCAGGCTCATCCCCCTTATTGTTCGGTGTAGAAGTGGCCTGAATTTCTCCAGATTCTGCGGGTGTTTCTGATAGCTCTGTTCCACTTTCAGGCAGGCGTTGTCATCCAGCACAGACtagctatactgtacatctcctCTATGTAATTCAAGTTCTCTTCAGTGGCTGGAATGCATTTTGGGCTcagtgcaggcttttgttccggCTCGTCTTGACGCTGTCCATTGCACTAATAATATTTTGACCCAGTGTGGACCCATCTTTGCAGAGCGCGGTCTGGGTTCGGTCTGGGTCTGCTTCAATGTAAACAAAGCGCTCTCCATTGGAACAGTTAGTGAGTTGGTTCTTGCATCGAATCATGCGTTTCATAACTTTCCCCAGTCTTGCAGCCTGCTTTGGTCAGAAACTCTGTCATCTGCTGATTCAGGCAGCTCTTTGATTGTACCTTGAACTGAGTTCTGATTGGCCATGCGTGACTTCAGACTGACAGGGTTGTTTTCCTTGAACAGTACATGCTTTCCACAGACATATATTCCTCCAATAAGGAGTTGCCCTTGCCTCCTATTTACTTAGATACGCCAGAGTGCACTCTCTGTACCAACCTCAAGTGGCTTGGGTGGATTCCCTGTATGCTATGGTTGAGCTATACTTCCTTCAGGGGGTTAGCTCTGGCCTCCTCCCTTGTAAGGATTTTTCTCTCCAAGATGAAGATAGGGTGAACCGTTTCCTTTGGTGTGTTGCGCCCGGCAACTGTACTTCAAGCCTCCTTTTCTTTAACATTTCCCTTAATGCTGCTTGATGTGGCAGCCCCCATGCACTCTGCCATGTCAACTTGTTCTGATTTCACTATATTATGTCAAAAATCACATATAATCAAAACAAAATAATTAGGCAAGATTGTTCAGAGTAATGTAGTGAATTTAAATCTTGTTGTATTAACAGAGGGTGGTTGATTTTGTAGGAGATATTCCCCAGATTAAGGTGTCTCCTTTGTTCAGGCAAACCCACAACGGTAAGGCTGATGTGTGCGGCTTCATGGTCAGGTTCAAACAGTGCACTCAGTACACAAAGAACAAACTGTGGCCCTATGTGGGATGTACCCAGACGACCATATTTACTTAGCTTAGCGAATCAAGTGGTAaggtatcttagtggtgaagtGTTACCCCCTATTGACTTGATAGGCATAAATGTTCGTTGTCTCTGTTTGGGTCACTACACCACCCATGTCTCATGTTACAGtcatgacaacaaaaaaaaacctggccTGTATAAAAGGTCAAACCTGAGATGCCCTGCCTCATCACCACGGTGGCCCGCTGAGTGACTCCTCCTGCAAAGTGCTTGGCTCTGTCCTCTCTTAATTGGTTGACAGTGGCGACACATGCCTGCTTAGTGTCCTCTCTGACCTCACTTTCTGCGACAATTTCAGTTTTGGACCCTCTTCTTCCTGTGGGTGCGTCCGTGGCAACTCACCTTGTGAGTTAGTTGTCGTGCCAACCAAAGCGACAATGTTTTGGAGAGGAGTCTGAGCCAGCAGTGCCAGCTGCCAATCACATTGTTCCTTCCTCTAGCCATCCCGCCCAGCTCTCGTATCAGTCCCCCAAAATCCCGAGGCAGGCAGTAGCGCGGGACACCTCTGAGGTCTTTGGGGATGTCTCGGCTGTGACAGAGGTCCTGGAAGTAGACAAGGGCAAAGCCGTGGCTCTTGCCTGTCCCCTGTAGTGCCCCCtgcagacaggacagggcagcCCTGAACACCGGCCCCGTCACTGAGGAgggctccctctcctcctctccgctcctACCTTCCTCTTTCCATTCCACTCCTTTCTCCATTCCTGCTTGCTCCTGTATATCTCTTGTTAACTCAAGTCCTTtcagctcctctcctccactctccccttGTCgcatctcctctcctttactccctCCTATCTTTTTCTCATCTCTCCTATTCCCTCCATCTCGCTCTTCTCTCCAGCTCTTGTAGGACTCCTTAGCCTCTGGGCTCCATATGATCAGCACCCGGCCTCCTGCCTCTCTGACTGCCTCCCACTGTCCATACATCCAGGGCACAGGGCCCAGCTCAGCCACACCAGCCCCAGACCTCTCCATAGCCCCAGGACCATCCCCATTGGAGATCTGGGCCCACAGAGCCATGCGCACGTCAGCACACAGCTCTCCCTGTAGAATGGAGGCCAAAGCACACACGGGAGACACATGGGTTGACAGCTCTGAGGAACACACCAACAACACAGGCCTCTGGAT

Function

NR:

description
uncharacterized protein LOC110531978

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU908811 False 3760 lncRNA 0.46 3 35915737 35919753
TU908810 True 3850 lncRNA 0.45 2 35915882 35919753

Neighbor

gene id symbol gene type direction distance location
LOC110531975 LOC106571876 coding upstream 22327 35885933 ~ 35893410 (+)
LOC110531973 LOC106571875 coding upstream 59633 35752012 ~ 35856104 (+)
LOC110531972 LOC106566626 coding upstream 171317 35666422 ~ 35744420 (+)
LOC110531971 LOC106571873 coding upstream 363760 35544777 ~ 35551977 (+)
LOC110531969 LOC106571870 coding upstream 419599 35487368 ~ 35496138 (+)
LOC110531941 LOC106580207 coding downstream 329591 36249344 ~ 36262924 (+)
si:dkey-7l6.3 LOC106580210 coding downstream 467165 36386918 ~ 36396094 (+)
trnap-agg-57 NA coding downstream 553154 36472907 ~ 36472978 (+)
trnap-agg-58 NA coding downstream 554383 36474136 ~ 36474207 (+)
trnap-agg-59 NA coding downstream 557017 36476770 ~ 36476841 (+)
G798568 NA non-coding upstream 810 35914688 ~ 35914927 (+)
G798565 NA non-coding upstream 4820 35910565 ~ 35910917 (+)
G798564 NA non-coding upstream 5765 35909764 ~ 35909972 (+)
G798498 NA non-coding upstream 80430 35779708 ~ 35835307 (+)
G798583 NA non-coding downstream 15921 35935674 ~ 35936217 (+)
G798584 NA non-coding downstream 16916 35936669 ~ 35937011 (+)
G798701 NA non-coding downstream 198415 36118168 ~ 36118819 (+)
G798717 NA non-coding downstream 229207 36148960 ~ 36149217 (+)
G798718 NA non-coding downstream 229583 36149336 ~ 36149750 (+)
G797932 pphln other upstream 543589 35364988 ~ 35372148 (+)
G797056 NA other upstream 1359115 34555931 ~ 34556622 (+)
G796495 LOC106613263 other upstream 1793997 34121422 ~ 34121740 (+)
G794886 LOC106577459 other upstream 3328349 32583606 ~ 32587388 (+)
G794893 NA other upstream 3412988 32502396 ~ 32502749 (+)
G799053 NA other downstream 393376 36313129 ~ 36316805 (+)
G799578 LOC106571900 other downstream 1114665 37034418 ~ 37035918 (+)
G799858 LOC106571908 other downstream 1647492 37567245 ~ 37570411 (+)
G800834 NA other downstream 2150463 38070216 ~ 38071433 (+)
G801778 NA other downstream 2868308 38788061 ~ 38788354 (+)

Expression


Co-expression Network