G798675


Basic Information

Item Value
gene id G798675
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 36168770 ~ 36195022 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU908986
ccataaacaaggtctaaatcatgtttggttgcactttggaagtacattttttacagaactgttcaaactagatgatagggacactgtggacaattttcagcaagttgcagcaattgaactacagaaataaccacttttccataaacaagctctaaaatcatgtttgatgcaactctggatacaatgtttaaaacataactgttcaaactagatgatagggacactgtggacaattttcagcaatttgcagcaattgaactacagaaataaccacttttccataaacaaggtctaaaatcatgtttgatgcactctggatacaatgttttaaacataactgtt
>TU908983
cacttttccataaacaaggtctaaaatcatgtttgatgcactctggatacaatgttttaaacataactgttcaaactagatgatagggacactatggccaattttcagcaagttgcagcaattgaactacagaaataaccacttttacataaacaaggtctaaatcatgtttggttgcactttggaagtacattttttacagaactgttcaaactagatgatagggacactggacaattttcagcaagttgcagcaattgaactacagaaataaccacttttccataaacaaggtctaaatcatgtttggttgcactttggaagtacattttttacagaactgttaaaactagatgatagggacactgtggacaattttcagcaagttgcagcaattgaactacagaaataaccacttttccataaacaaggtctacaatcatgtttgatgcactctggatacaaagttttaaacataactgttcaaactagatgatagggacactgtggacaattttcagcaatttgcagcaattgaactacagaaataaccacttttccataaacaaggtctacaatcatgtttgatgcactctggatacaaagttttaaacataactgttcaaactagatgatagggacactgtggacaattttcagcaatttgcagcaattgaactacagaaataaccacttttccataaacaaggtctaaaatcatgtttgatgcactctggatacaatgttttaaacataactgttcaaactagatgatagggacactggacaattt
>TU908985
taaccacttttccataaacaaggtctaaaatcatgtttgatgcactctggatacaatgttttaaacataactgttcaaactagatgatagggacactatggccaattttcagcaagttgcagcaattgaactacagaaataaccacttttcaataAACAAAGtcttaaatcatgtttgatgcaatctgGATACAATGTCTTAAACATAacagttcaaactagatgatagagacactgtggacaattttcagcaagttgcagcaattgaactacagaaataaccacttctccataaacaaggtctaaaatcatgtttgatgcactctggatacaatgttttaaacataactgttcaaactagatgatagggaaactatggccaattttcagcaagttgcagcaattgaactacagaaataactactttccataaacaagctctaaaatcatgtttgatgaactctggatacaatctttAAAACATaactggatacaatgtttaaaacataactgttcaaactagatgatagggacaattttcagcaagttgcagcaattgaactacagaaataaccacttttacataaacaaggtctaaatcatgtttggttgcactttggaagtacattttttacagaactgttcaaactagatgatagggacactggacaattttcagcaagttgcagcaattgaactacagaaataaccacttttccataaacaaggtctaaatcatgtttggttgcactttggaagtacattttttacagaactgttaaaactagatgatagggacactgtggacaattttcagcaagttgcagcaattgaactacagaaataaccacttttccataaacaaggtctacaatcatgtttgatgcactctggatacaaagttttaaacataactgttcaaactagatgattgggacactgtggacaattttcagcaatttgcagcaattgaactacagaaataaccacttttccataaacaaggtctaaaatcatgtttgatgcaatctggatacaatgttttaaacataacagttcaaactagatgatagagacactgtggacaattttcagcaagttgcagcaattgaactacagaaataaccacttttccataaacaaggtctaaaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU908986 False 342 lncRNA 0.34 2 36168770 36173855
TU908983 False 793 lncRNA 0.34 2 36176707 36178755
TU908985 True 1153 lncRNA 0.33 3 36177667 36195022

Neighbor

gene id symbol gene type direction distance location
LOC110531975 LOC106571876 coding upstream 275360 35885933 ~ 35893410 (+)
LOC110531973 LOC106571875 coding upstream 312666 35752012 ~ 35856104 (+)
LOC110531972 LOC106566626 coding upstream 424350 35666422 ~ 35744420 (+)
LOC110531971 LOC106571873 coding upstream 616793 35544777 ~ 35551977 (+)
LOC110531969 LOC106571870 coding upstream 672632 35487368 ~ 35496138 (+)
LOC110531941 LOC106580207 coding downstream 54322 36249344 ~ 36262924 (+)
si:dkey-7l6.3 LOC106580210 coding downstream 191896 36386918 ~ 36396094 (+)
trnap-agg-57 NA coding downstream 277885 36472907 ~ 36472978 (+)
trnap-agg-58 NA coding downstream 279114 36474136 ~ 36474207 (+)
trnap-agg-59 NA coding downstream 281748 36476770 ~ 36476841 (+)
G798719 NA non-coding upstream 18399 36149962 ~ 36150371 (+)
G798718 NA non-coding upstream 19020 36149336 ~ 36149750 (+)
G798717 NA non-coding upstream 19553 36148960 ~ 36149217 (+)
G798701 NA non-coding upstream 49951 36118168 ~ 36118819 (+)
G798584 NA non-coding upstream 231759 35936669 ~ 35937011 (+)
G798734 NA non-coding downstream 34085 36229107 ~ 36231013 (+)
G799011 NA non-coding downstream 41927 36236949 ~ 36237149 (+)
G799026 snap29 non-coding downstream 108050 36303072 ~ 36303901 (+)
G799089 NA non-coding downstream 187014 36382036 ~ 36382235 (+)
G799091 NA non-coding downstream 188114 36383136 ~ 36383353 (+)
G797932 pphln other upstream 796622 35364988 ~ 35372148 (+)
G797056 NA other upstream 1612148 34555931 ~ 34556622 (+)
G796495 LOC106613263 other upstream 2047030 34121422 ~ 34121740 (+)
G794886 LOC106577459 other upstream 3581382 32583606 ~ 32587388 (+)
G794893 NA other upstream 3666021 32502396 ~ 32502749 (+)
G799053 NA other downstream 118107 36313129 ~ 36316805 (+)
G799578 LOC106571900 other downstream 839396 37034418 ~ 37035918 (+)
G799858 LOC106571908 other downstream 1372223 37567245 ~ 37570411 (+)
G800834 NA other downstream 1875194 38070216 ~ 38071433 (+)
G801778 NA other downstream 2593039 38788061 ~ 38788354 (+)

Expression


Co-expression Network