G798674


Basic Information

Item Value
gene id G798674
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 36192219 ~ 36228598 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU908973
caattgaactacagaaataaccacttttccataaacaaggtctaaatcatgtttggttgcactttggaagtacattttttacagaactgttcaaactagatgatagggacactgtggacaattttcagcaagttgcagcaattgaattacagatataaccacttttccataaacaaggtctacaatcatgtttgatgcactctggatacaaagttttaaacataactgttcaaactagatgattgggacactgtggacaattttcagcaatttgcagcaattgaactacagaaataaccacttttccataaacaaggtctaaatcatgtttggttgcactttggaagtacattttttacagaactgttcaaactagatgatagggacactggacaattttcagcaagttgcagcaattgaactacagaaataaccaattttcaataaacaaagtctaaaatcatgtttgatgcaatctgGATACAATGTCTTAAACATAacagttcaaactagatgatagagacactgtggacaattttcagcaagttgcagcaattgaactacagaaataaccacttctccataaacaaggtctaaaatcatgtttgatgcactctggatacaatgttttaaacataactgttcaaactagatgatagggaaactatggccaattttcagcaagttgcagcaattgaactacagaaataaccacttttccataaacaaggtctaaaatcatgtttgatgcactctggatacaatgttttaaacataactgttcaaactagatgatagggacattggaccattttcagcaagttgcagcaattgaactacagaaataaccacttttcaataaacaagctctaacatcatgtttgatgaactctggatacaatgttttaaacataactgttcaaactagatgatagggacacttttcagcaagtagcagcaattgaactacagaaataaccactttccataaataaggtcta
>TU908977
caattgaactacagaaataaccacttttccataaacaaggtctaaatcatgtttggttgcactttggaagtacattttttacagaactgttcaaactagatgatagggacactgtggacaattttcagcaagttgcagcaattgaattacagatataaccacttttccataaacaaggtctaaaatcatgtttgatgcactctggatacaatgttttaaacataactgttcaaactagatgatagggaaactatggccaattttcagcaagttgcagcaattgaactacagaaataaccacttttccataaacaaggtctaaaatcatgtttgatgcactctggatacaatgttttaaacataactgttcaaactagatgatagggacattggaccattttc
>TU908978
caattgaactacagaaataaccacttttccataaacaaggtctaaatcatgtttggttgcactttggaagtacattttttacagaactgttcaaactagatgatagggacactgtggacaattttcagcaagttgcagcaattgaattacagatataaccacttttccataaacaagctctaaaatcatgtttgatgaactctggatacaatgttttaaacataactgttcaaactagatgatagggacaattttcagcaagttgcagcaattgaactacagaaataaccacttttccataaacaaggtctaaatcatgtttggttgcactttggaattacattttttacagaactgttcaaactagatgatagggacactatggacaattttcagcaagttgcagcaattgaactacagaaataaccacttttccataaacaagctctaaaatcatgtttgatgcaactctggatacaatgtttaaaacataactgttcaaactagatgatagggacaattttcagcaagttgcagcaattgaactacagaagtaaccacttttccataaacaaggtctaaatcatgtttggttgcactttggaagtacattttttacagaactgttcaaactagatgatagggacactatggacaattttcagcaagttaaagcaattgaactacagatataaccacttttacataaacaagctctaaaatcatgtttgatgaactctggatacaatgttttaaacataactgttcaaactagatgatagggacaattttcaacaagttgcagcaattgaactacagaaataaccacttttccataaacaaggtctaaatcatgtttggttgcactttggaattacattttttacagaactgttcaaactagatgatagggacactatggacaattttcagcaagttgcagcaattgaactacagaaataaccacttttccataaacaagctctaaaatcatgtttgatgcaactctggatacaatgtttaaaacataactgttcaaactagatgatagggacaattttcagcaagttgcagcaattgaactacagaagtaaccacttttccataaacaaggtctaaatcatgtttggttgcactttggaagtacattttttacagcactgttcaaactagatgataggaacactggacaattttcagcaagttgcagcaattgaactacagaaataatcacttttccataaacaagttctaaaatcatgtttgatgcactctggatacaatgttttaaacataactgttcaaactagatgatagggacactggacaattttcagcaagttgcagcaattgaactacagaaataaccacttttccataccttaagggaacattttgacatttcgtgtatggttagtgagaaagtccatagggccggacctaccgggaagtcatcgaatgaactttgtcggacattcggtttccgtttcaTAAAATAAACAAGTTTAGGACCATTTTTCCGCTATCCCGGaaattcccacaagagggcataaggaatcatatggcaatttgactaaacatcacgaatcacgacggggccttatctcgaaaactgaaaatatttcgaagccgaaacttggtgagcgtaggtttggcataatgggcagttggccccgaacaagatggcgtctaggcctcaa
>TU908974
caattgaactacagaaataaccacttttccataaacaaggtctaaatcatgtttggttgcactttggaagtacattttttacagaactgttcaaactagatgatagggacactgtggacaattttcagcaagttgcagcaattgaattacagatataaccacttttccataaacaaggtctacaatcatgtttgatgcactctggatacaaagttttaaacataactgttcaaactagatgattgggacactgtggacaattttcagcaatttgcagcaattgaactacagaaataaccacttttccataaacaaggtctaaatcatgtttggttgcactttggaagtacattttttacagaactgttcaaactagatgatagggacactggacaattttcagcaagttgcagcaattgaactacagaaataaccaattttcaataaacaaagtctaaaatcatgtttgatgcaatctgGATACAATGTCTTAAACATAacagttcaaactagatgatagagacactgtggacaattttcagcaagttgcagcaattgaactacagaaataaccacttctccataaacaaggtctaaaatcatgtttgatgcactctggatacaatgttttaaacataactgttcaaactagatgatagggaaactatggccaattttcagcaagttgcagcaattgaactacagaaataaccacttttccataaacaaggtctaaaatcatgtttgatgcactctggatacaatgttttaaacataactgttcaaactagatgatagggacattggaccattttcagcaagttgcagcaattgaactacagaaataaccacttttcaataaacaagctctaacatcatgtttgatgaactctggatacaatgttttaaacataactgttcaaactagatgatagggacacttttcagcaagtagcagcaattgaactacagaaataaccactttccataaataaggtcta
>TU908975
caattgaactacagaaataaccacttttccataaacaaggtctaaatcatgtttggttgcactttggaagtacattttttacagaactgttcaaactagatgatagggacactgtggacaattttcagcaagttgcagcaattgaattacagatataaccacttttccataaacaaggtctacaatcatgtttgatgcactctggatacaaagttttaaacataactgttcaaactagatgattgggacactgtggacaattttcagcaatttgcagcaattgaactacagaaataaccacttttccataaacaaggtctaaatcatgtttggttgcactttggaagtacattttttacagaactgttcaaactagatgatagggacactggacaattttcagcaagttgcagcaattgaactacagaaataaccaattttcaataaacaaagtctaaaatcatgtttgatgcaatctgGATACAATGTCTTAAACATAacagttcaaactagatgatagagacactgtggacaattttcagcaagttgcagcaattgaactacagaaataaccacttctccataaacaaggtctaaaatcatgtttgatgcactctggatacaatgttttaaacataactgttcaaactagatgatagggaaactatggccaattttcagcaagttgcagcaattgaactacagaaataaccacttttccataaacaaggtctaaaatcatgtttgatgcactctggatacaatgttttaaacataactgttcaaactagatgatagggacattggaccattttcagcaagttgcagcaattgaactacagaaataaccacttttcaataaacaagctctaacatcatgtttgatgaactctggatacaatgttttaaacataactgttcaaactagatgatagggacacttttcagcaagtagcagcaattgaactacagaaataaccactttccataaataaggtcta
>TU908976
caattgaactacagaaataaccacttttccataaacaaggtctaaatcatgtttggttgcactttggaagtacattttttacagaactgttcaaactagatgatagggacactgtggacaattttcagcaagttgcagcaattgaattacagatataaccacttttccataaacaagctctaaaatcatgtttgatgaactctggatacaatgttttaaacataactgttcaaactagatgatagggacaattttcagcaagttgcagcaattgaactacagaaataaccacttttccataaacaaggtctaaatcatgtttggttgcactttggaattacattttttacagaactgttcaaactagatgatagggacactatggacaattttcagcaagttgcagcaattgaactacagaaataaccacttttccataaacaagctctaaaatcatgtttgatgcaactctggatacaatgtttaaaacataactgttcaaactagatgatagggacaattttcagcaagttgcagcaattgaactacagaagtaaccacttttccataaacaaggtctaaatcatgtttggttgcactttggaagtacattttttacagaactgttcaaactagatgatagggacactatggacaattttcagcaagttaaagcaattgaactacagatataaccacttttacataaacaagctctaaaatcatgtttgatgaactctggatacaatgttttaaacataactgttcaaactagatgatagggacaattttcaacaagttgcagcaattgaactacagaaataaccacttttccataaacaaggtctaaatcatgtttggttgcactttggaattacattttttacagaactgttcaaactagatgatagggacactatggacaattttcagcaagttgcagcaattgaactacagaaataaccacttttccataaacaagctctaaaatcatgtttgatgcaactctggatacaatgtttaaaacataactgttcaaactagatgatagggacaattttcagcaagttgcagcaattgaactacagaagtaaccacttttccataaacaaggtctaaatcatgtttggttgcactttggaagtacattttttacagcactgttcaaactagatgataggaacactggacaattttcagcaagttgcagcaattgaactacagaaataatcacttttccataaacaagttctaaaatcatgtttgatgcactctggatacaatgttttaaacataactgttcaaactagatgatagggacactggacaattttcagcaagttgcagcaattgaactacagaaataaccacttttccataccttaagggaacattttgacatttcgtgtatggttagtgagaaagtccatagggccggacctaccgggaagtcatcgaatgaactttgtcggacattcggtttccgtttcaTAAAATAAACAAGTTTAGGACCATTTTTCCGCTATCCCGGaaattcccacaagagggcataaggaatcatatggcaatttgactaaacatcacgaatcacgacggggccttatctcgaaaactgaaaatatttcgaagccgaaacttggtgagcgtaggtttggcataatgggcagttggccccgaacaagatggcgtctaggcctcaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU908973 False 1001 lncRNA 0.34 2 36192219 36199035
TU908977 False 402 lncRNA 0.34 2 36192219 36193171
TU908978 False 1700 lncRNA 0.36 2 36192219 36228598
TU908974 False 1001 lncRNA 0.34 2 36195680 36204144
TU908975 False 1001 lncRNA 0.34 2 36195680 36199035
TU908976 True 1700 lncRNA 0.36 2 36195680 36228598

Neighbor

gene id symbol gene type direction distance location
LOC110531975 LOC106571876 coding upstream 298809 35885933 ~ 35893410 (+)
LOC110531973 LOC106571875 coding upstream 336115 35752012 ~ 35856104 (+)
LOC110531972 LOC106566626 coding upstream 447799 35666422 ~ 35744420 (+)
LOC110531971 LOC106571873 coding upstream 640242 35544777 ~ 35551977 (+)
LOC110531969 LOC106571870 coding upstream 696081 35487368 ~ 35496138 (+)
LOC110531941 LOC106580207 coding downstream 20746 36249344 ~ 36262924 (+)
si:dkey-7l6.3 LOC106580210 coding downstream 158320 36386918 ~ 36396094 (+)
trnap-agg-57 NA coding downstream 244309 36472907 ~ 36472978 (+)
trnap-agg-58 NA coding downstream 245538 36474136 ~ 36474207 (+)
trnap-agg-59 NA coding downstream 248172 36476770 ~ 36476841 (+)
G798677 NA non-coding upstream 9365 36181587 ~ 36182854 (+)
G798719 NA non-coding upstream 41848 36149962 ~ 36150371 (+)
G798718 NA non-coding upstream 42469 36149336 ~ 36149750 (+)
G798717 NA non-coding upstream 43002 36148960 ~ 36149217 (+)
G798701 NA non-coding upstream 73400 36118168 ~ 36118819 (+)
G798734 NA non-coding downstream 509 36229107 ~ 36231013 (+)
G799011 NA non-coding downstream 8351 36236949 ~ 36237149 (+)
G799026 snap29 non-coding downstream 74474 36303072 ~ 36303901 (+)
G799089 NA non-coding downstream 153438 36382036 ~ 36382235 (+)
G799091 NA non-coding downstream 154538 36383136 ~ 36383353 (+)
G797932 pphln other upstream 820071 35364988 ~ 35372148 (+)
G797056 NA other upstream 1635597 34555931 ~ 34556622 (+)
G796495 LOC106613263 other upstream 2070479 34121422 ~ 34121740 (+)
G794886 LOC106577459 other upstream 3604831 32583606 ~ 32587388 (+)
G794893 NA other upstream 3689470 32502396 ~ 32502749 (+)
G799053 NA other downstream 84531 36313129 ~ 36316805 (+)
G799578 LOC106571900 other downstream 805820 37034418 ~ 37035918 (+)
G799858 LOC106571908 other downstream 1338647 37567245 ~ 37570411 (+)
G800834 NA other downstream 1841618 38070216 ~ 38071433 (+)
G801778 NA other downstream 2559463 38788061 ~ 38788354 (+)

Expression


Co-expression Network