G798734


Basic Information

Item Value
gene id G798734
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 36229107 ~ 36231013 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU909050
cccccataaactgtaagtcagtcatttctcccaacagatgtcaaagaaaagctctcacacacacacacacacacacagcaaggatggagtgacaaagtgcggtgcttaaagacacagagagcaggcaatggcattaccataatccctaacgagatatcccgcttgaccgtagctcgctcggtctaggcgcagcgaccattagaagagtaggcccaaaatgaagcctgccccacaacgtcatttgattttaggtgacagtgagagaaccgttagggtgagaagaaaaattccaccacaggaatgttcctaaggtcctcccgatcagtgcaagcctaaccttgaccgtgtggcattaacccttaatagttaaaagaaggtgtttacatcaaacagtttgcattgacttctctccccataggaatacattgtcTGCactcctaaattcaacctgaagcctatatgggttatgaatgccgtatgaacctgtcttcggtaccagtccatcaggccactatgaggtctacctgtgttgattctaagcttcctggaccaaccggaagtggttaaaatcaccctaaaagtgtatatccataccctgcctgcagtttgatagacatagtgcattcaaccctgtctaaatcagtcaattcttaacgtaaagacttaaaactcaggattctgtaaaagcataccccaatgaggatatgtgttgacttatagcttcctgtgccaaccggaagtgccataattggtgtctcaggggctgtttcgaagggttaaaaaagtcagatctgtccaaaacttcatatatgtgattaggcaacccccatgaactgtaaatcagtcatttttcccataaaatttcaaaggaaaactaaatcacactaaaacacaacttggaaggagggacgtattggggtgcgtagagacagacagtggctgcaatagttagctttgttcgagctaaaaaagaaccgtcagacctagagttccgaaactttagaaacctgttctagacctccggtcgatagtgcgtggtgagttaggtggctctagatggttctcggacTGAGAAACAGCCTcctaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU909050 True 1088 lncRNA 0.44 2 36229107 36231013

Neighbor

gene id symbol gene type direction distance location
LOC110531975 LOC106571876 coding upstream 335697 35885933 ~ 35893410 (+)
LOC110531973 LOC106571875 coding upstream 373003 35752012 ~ 35856104 (+)
LOC110531972 LOC106566626 coding upstream 484687 35666422 ~ 35744420 (+)
LOC110531971 LOC106571873 coding upstream 677130 35544777 ~ 35551977 (+)
LOC110531969 LOC106571870 coding upstream 732969 35487368 ~ 35496138 (+)
LOC110531941 LOC106580207 coding downstream 18331 36249344 ~ 36262924 (+)
si:dkey-7l6.3 LOC106580210 coding downstream 155905 36386918 ~ 36396094 (+)
trnap-agg-57 NA coding downstream 241894 36472907 ~ 36472978 (+)
trnap-agg-58 NA coding downstream 243123 36474136 ~ 36474207 (+)
trnap-agg-59 NA coding downstream 245757 36476770 ~ 36476841 (+)
G798674 NA non-coding upstream 509 36192219 ~ 36228598 (+)
G798673 NA non-coding upstream 9290 36172441 ~ 36219817 (+)
G798676 NA non-coding upstream 17382 36187208 ~ 36211725 (+)
G798678 NA non-coding upstream 28235 36194751 ~ 36200872 (+)
G798675 NA non-coding upstream 34085 36168770 ~ 36195022 (+)
G799011 NA non-coding downstream 5936 36236949 ~ 36237149 (+)
G799026 snap29 non-coding downstream 72059 36303072 ~ 36303901 (+)
G799089 NA non-coding downstream 151023 36382036 ~ 36382235 (+)
G799091 NA non-coding downstream 152123 36383136 ~ 36383353 (+)
G799096 NA non-coding downstream 167188 36398201 ~ 36399373 (+)
G797932 pphln other upstream 856959 35364988 ~ 35372148 (+)
G797056 NA other upstream 1672485 34555931 ~ 34556622 (+)
G796495 LOC106613263 other upstream 2107367 34121422 ~ 34121740 (+)
G794886 LOC106577459 other upstream 3641719 32583606 ~ 32587388 (+)
G794893 NA other upstream 3726358 32502396 ~ 32502749 (+)
G799053 NA other downstream 82116 36313129 ~ 36316805 (+)
G799578 LOC106571900 other downstream 803405 37034418 ~ 37035918 (+)
G799858 LOC106571908 other downstream 1336232 37567245 ~ 37570411 (+)
G800834 NA other downstream 1839203 38070216 ~ 38071433 (+)
G801778 NA other downstream 2557048 38788061 ~ 38788354 (+)

Expression


Co-expression Network