XLOC_027096 (camk1da)


Basic Information

Item Value
gene id XLOC_027096
gene name camk1da
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 7888047 ~ 7983016 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053412
atTGCCATAACAACAGATGCAGCGCATCAGTCCATCCGCGCAGGATCAACCTTCAGCATCAGCATCATCCGCGCGGGGCGGAATAAACCCGCACCGGTGCCGTTAAGACACCGCAAAGGTGACACGCACGCACGAGCCACTCTCAACTATTTACGTCAAACCGTTTAAGCAGCTGCAGGGTGACGAGCGCACGCGGGAGATCCTCTCCGGGGTTATTCGGTAACGGTACAACCGGGGAAGGCGAGAGAAGCCAGTCAAGGAGAGAGAGAGCAGGAAGTGCAGCGTGGGAAAGCGGGGAAAATCTCCGGGGATCTCCAGCGCTCACTTCTCCATCTACGGTCCTCCCCGTTTTTTTCCGCCATGGCTCGGGAGAACGGAGAGGCCGGCGGGGACTGCTCGTGGAAGAAGCAAGTCGATAATATCAAGGAGATTTTTGAATTCAAGGAGGTGCTCGGGACGGGTGCGTTCTCAGAGGTGGTCCTGGCGGAGGAGCGGTCCACGGGAAAGATGTACGCTGTGAAATGCATCCCTAAAAAAGCTCTGAAGGGGAAGGAGAGCAGCATCGAGAATGAGATCGCCGTTCTGCGCAAAATTAAGCATGAGAACATAGTGGCTCTTGAAGACATCTACGAAAGCTCAGATCACCTCTACCTTATAATGCAGCTTGTGTCTGGAGGAGAGCTGTTCGACCGGATAGTAGAGAAGGGGTTTTACACAGAGAAAGACGCCAGCACACTCATCAGACAAGTACTGGATGCTGTCAACTACCTCCACACTATGGGCATCGTCCATCGAGACCTGAAGCCTGAGAATCTGCTCTACTTCAACCCTCAAGACGGCTCAAAAATCATGATCAGTGACTTCGGCCTGTCTAAGATGGAGGGGACAGGGGATGTCATGTCCACCGCCTGCGGGACGCCAGGATACGTGGCTCCAGAAGTCCTCGCTCAGAAACCGTACAGTAAAGCTGTAGACTGCTGGTCTATCGGAGTCATTGCCTACATCCTGCTGTGTGGTTATCCTCCTTTCTATGATGAGAATGACTCCAAACTCTTTGAGCAGATCCTGAAAGCCGACTACGAGTTTGATGCCCCGTACTGGGACGATATTTCAGATTCAGCAAAAGATTTCATCAGTTGTTTGATGGAAAAGGACCCCTCAAAACGAAACACATGCGAACAGGCTCTTCGACATCCCTGGATCGCAGGCGACACGGCACTCTGCAAGAACATCCACGAGTCCGTCAGTCGACAGATGCGCAAAAACTTCGCAAAAAGCAAATGGAGACAAGCCTTTAATGCCACGGCGGTGGTTCGCCACATGAGGAGACTGCAGTTGGGCAGTAGTATGGGAAGCAGCATGGATCAGTCAAACACTGCAAACCAGAACCGCATACTGAACGCAAACCCACCGCTCAACACAACTACGAATTCCACCGCACCACTGACCCAAAACCAAAAACCTGCTCCAAACCCAAACGCCATTCTCAATAATGACATGGCCACTGGAAACACCCCCACACCACGCAAAGACTGTACCGCCCCTCCCCACACGTCTTGTTCTCTGGCATCAGCTGCTTCCTCCTCCTCAGGGGCGGAGCCATGCAGGCCCCTCCCTCCCTCTGTTGCGTCTGTGAGCACAGTGGTAACTGGGACCAAGTGACGCCAGGTTCTGCGGGGAGAGAGCTGGGAGGCCACAGCGCTGTGAGCCCCGCCCCTCAGCCCACCCCCCGCCCTGCCGTCCAATCAGGCAGAGGACTGACCCATCGCCATAGCAACCACTGCGCGCGCCTAATGCACTCCTGCCATTTAACCTCCAGGCCACTAGAGGGTGCAATGCATGCAGCGGCAGGAGACCAGATTTCCAGCAGACGGCTTCCTTTTTGAGAAGTGATTTGAACAGAACTGTGAGGATGTCTTTGCCGAGAATGTGCTACGAATCCTGCTACGAACGCAGAGGTTTAGGTGCGAAAGTGCGTGCATGATTATGTCCGACCTTATAAGAGGGCGGCGCCAATGTTAAACGATTCTACTATATCATTACATGTCTAGCTCTTCCCTCTTTCCCCTGTCTTTCTCTATCTACTCACGAGTTATTGTAATCCTTGTTGGCTACCATTTTCTTTCGAGGTTTCATGCTGACCTGCAGAAGTGCTTTTAATAATCACGTTTTACGACTGTTTTGAGACATTTTCTGAGTCGAGACTTTCTGTTTGCACACAAGAGAGAGCGGTTAGCGGATATATTGACGTTTTTTACAAATGCAAAGGATGGGAGACTTTCAATGTCACACCTCACGGTTGGGTTTGACCATCACAAAATTTACGGTATCAGTTAAAACATGCAATATATGTTTGATTGCTATCTTTTTTGAAAAACGCAGAGAAGCAGCAGCTACTCTCTGCTTGAAGTGTGATTTTAAATAGACAAAGAAAGTTGTAGTTATTGAAGTACATACTGTAGTTAAACTGTTAATagtcaacacaaacacacacaaacgaatCTCCCGAAAAGCCATGGCAGCGTCTCTCTGCGCCCCAGTGTACGAGTTCTCAGGGAATTCCGCAGCTGCACTGGGCGCCATAGTTTGAGATCGTCTCATCCAGTCAGAATAATGTCGAAAATGTAGATAGAAAGCTGTTTAACTCTTATAATGATTGTATGATGGTTTGATCGTGCTAAAATGTTATGCTAAGTTCACGCAGTATCAGAATTAGCCTACTTTAAAGGCCCAGGTATACTTTTTTTATCGATTACCACTTCATTTTACACACAGATGTGCTCACACCACTTCTAAAACATACACAAACgagtatgaatgaatgagttcgaCACATGCGCCA

Function

symbol description
camk1da Enables calcium-dependent protein kinase activity and protein serine/threonine kinase activity. Involved in activation of protein kinase activity and peptidyl-serine autophosphorylation. Acts upstream of or within cartilage development; endocrine pancreas development; and pancreas regeneration. Predicted to be active in cytoplasm. Is expressed in several structures, including eye; fin; heart; muscle; and testis. Orthologous to human CAMK1D (calcium/calmodulin dependent protein kinase ID).

GO:

id name namespace
GO:0036289 peptidyl-serine autophosphorylation biological_process
GO:0018105 peptidyl-serine phosphorylation biological_process
GO:0031018 endocrine pancreas development biological_process
GO:0051216 cartilage development biological_process
GO:0032147 activation of protein kinase activity biological_process
GO:0006468 protein phosphorylation biological_process
GO:1990798 pancreas regeneration biological_process
GO:0016310 phosphorylation biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005516 calmodulin binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0004683 calmodulin-dependent protein kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0010857 calcium-dependent protein kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080402-7 Enables calcium-dependent protein kinase activity and protein serine/threonine kinase activity. Involved in activation of protein kinase activity and peptidyl-serine autophosphorylation. Acts upstream of or within cartilage development; endocrine pancreas development; and pancreas regeneration. Predicted to be active in cytoplasm. Is expressed in several structures, including eye; fin; heart; muscle; and testis. Orthologous to human CAMK1D (calcium/calmodulin dependent protein kinase ID).

Ensembl:

ensembl_id ENSDARG00000074905

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053412 True 2842 mRNA 0.50 11 7888047 7983016

Neighbor

gene id symbol gene type direction distance location
XLOC_027095 cdc123 coding upstream 4316 7876197 ~ 7883731 (+)
XLOC_027094 ucmaa coding upstream 37558 7841627 ~ 7850489 (+)
XLOC_027093 phyh coding upstream 51634 7827261 ~ 7836413 (+)
XLOC_027092 si:ch1073-67j19.2 coding upstream 61743 7822773 ~ 7826304 (+)
XLOC_027091 si:ch1073-67j19.1 coding upstream 66581 7817996 ~ 7821466 (+)
XLOC_027097 optn coding downstream 33441 8016457 ~ 8027318 (+)
XLOC_027098 NA coding downstream 62426 8045442 ~ 8049258 (+)
XLOC_027099 CU695020.2 coding downstream 151578 8134594 ~ 8134710 (+)
XLOC_027100 ninj2 coding downstream 185498 8168514 ~ 8208654 (+)
XLOC_027101 ERC1 coding downstream 230047 8213063 ~ 8515824 (+)
XLOC_027090 NA non-coding upstream 170388 7715601 ~ 7717659 (+)
XLOC_027088 NA non-coding upstream 221301 7652574 ~ 7666746 (+)
XLOC_027087 NA non-coding upstream 292350 7545660 ~ 7595697 (+)
XLOC_027085 NA non-coding upstream 381577 7415280 ~ 7506470 (+)
XLOC_027083 FO681358.1 non-coding upstream 724173 7163758 ~ 7163874 (+)
XLOC_027102 BX649324.3 non-coding downstream 520671 8503687 ~ 8503801 (+)
XLOC_027105 NA non-coding downstream 733109 8716125 ~ 8726451 (+)
XLOC_027107 NA non-coding downstream 891549 8874565 ~ 8885723 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000066_00109609_00131845 CAMK1D.L, CAMK1D, CAMK1DA coding CI01000066 null 109609 ~ 132179 (+)