G798995


Basic Information

Item Value
gene id G798995
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 36233938 ~ 36235633 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU909360
tatgtacatattctttatccccttacactgtgtacaagacagtagttttggaattgttagttagattacttgttattactgcattgtcggaactagaagcacaagcatttcgctacactcgcattaacatctgctaaccatgtgtatgtgacaaataaaatttgatttgatttgatttgatttaaacataactgttcaaactagatgatagggacatttttcagcaagtctcagcaattgaactacaggaataaccacttttccataaacaaggtctaaaatcatgtttgatgcactctggatacaatgttttaaacataactgttcaaactagatgatagggacactggacaattttcagcaagttgcagcaattgaactacagaaataaccacttttacataaacaaggtctaaatcatgtttggttgcactttggaagtacattttttacagaactgttcaaactagatgatagggacactgtggacaattttcagcaagttgcagcaattgaactacagaaataaccacttttccataaacaaggtctaaatcatgtttgatgcactctggatacaatgttttaaacataactgttcaaactagatgatagggacactggacaattttcagcaagttgcagcaattgaactacagaaataaccacttttacataaacaaggtctaaatcatgtttggttgcactttggaagtacattttttacagaactgttcaaactagatgaaagggatactatggacaattttcagcaagttgcagcaattaaactacagatataaccacctttccataaacaaggtctaacatcatgtttgatgcactctggatacaatgttttaaacataactgttcaaactagatgatagggacaattttcagcaagttgcagcaattgatctacagaaataaccacttttccataaacaaggtctaaaatcatgtttgatgcactctggatacaagccgcgccctcagagcatgcgcagaccagctggccggtgtgtttacggacatattcaatcaatccctataccagtctgctgttcccacatgctttaagggggccaccattgttcctgttcccaagaaagctaaggtaactgagctaaacgactaccgccccgtagcactcacatccgtcat
>TU909366
tatgtacatattctttatccccttacactgtgtacaagacagtagttttggaattgttagttagattacttgttattactgcattgtcggaactagaagcacaagcatttcgctacactcgcattaacatctgctaaccatgtgtatgtgacaaataaaatttgatttgatttgatttgatttaaacataactgttcaaactagatgatagggacatttttcagcaagtctcagcaattgaactacaggaataaccacttttccataaacaaggtctaaaatcatgtttgatgcactctggatacaatgttttaaacataactgttcaaactagatgatagggacactgtggacaattttcagcaagttgcagcaattgaactacagaaataaccacttttccataaacaaggtctaaaatcatgtttgatgaactctggatacaatgttttaaacataactgttcaaactagatgatagggacaattttcagcaagttgcagcaattgaactacagaaataaccacttttccataaacaaggtctaaaatcatgtttgatgcactctggatacaagccgcgccctcagagcatgcgcagaccagctggccggtgtgtttacggacatattcaatcaatccctataccagtctgctgttcccacatgctttaagggggccaccattgttcctgttcccaagaaagctaaggtaactgagctaaacgactaccgccccgtagcactcacatccgtcat
>TU909368
tatgtacatattctttatccccttacactgtgtacaagacagtagttttggaattgttagttagattacttgttattactgcattgtcggaactagaagcacaagcatttcgctacactcgcattaacatctgctaaccatgtgtatgtgacaaataaaatttgatttgatttgatttgatttaaacataactgttcaaactagatgatagggacatttttcagcaagtctcagcaattgaactacaggaataaccacttttccataaacaaggtctaaaatcatgtttgatgcactctggatacaatgttttaaacataactgttcaaactagatgatagggacactgtggacaattttcagcaagttgcagcaattgaactacagaaataaccacttttccataaacaaggtctaaatcatgtttggttgcactttggaagtacattttttacagaactgttcaaactagatgatagggacactggacaattttcagcaagttgcagcaattgaactacagaaataaccacttttacataaacaaggtctaaatcatgtttggttgcactttggaagtacattttttacagaactgttcaaactagatgaaagggatactatggacaattttcagcaagttgcagcaattaaactacagatataaccacctttccataaacaaggtctaacatcatgtttgatgcactctggatacaatgttttaaacataactgttcaaactagatgatagggacaattttcagcaagttgcagcaattgatctacagaaataaccacttttccataaacaaggtctaaaatcatgtttgatgcactctggatacaagccgcgccctcagagcatgcgcagaccagctggccggtgtgtttacggacatattcaatcaatccctataccagtctgctgttcccacatgctttaagggggccaccattgttcctgttcccaagaaagctaaggtaactgagctaaacgactaccgccccgtagcactcacatccgtcat
>TU909371
tatgtacatattctttatccccttacactgtgtacaagacagtagttttggaattgttagttagattacttgttattactgcattgtcggaactagaagcacaagcatttcgctacactcgcattaacatctgctaaccatgtgtatgtgacaaataaaatttgatttgatttgatttgatttaaacataactgttcaaactagatgatagggacatttttcagcaagtctcagcaattgaactacaggaataaccacttttccataaacaaggtctaaaatcatgtttgatgcactctggatacaatgttttaaacataactgttcaaactagatgatagggacactggacaattttcagcaagttgcagcaattgaactacagaaataaccacttttacataaacaaggtctaaatcatgtttggttgcactttggaagtacattttttacagaactgttcaaactagatgatagggacactgtggacaattttcagcaagttgcagcaattgaactacagaaataaccacttttccataaacaaggtctaaatcatgtttggttgcactttggaagtacattttttacagaactgttcaaactagatgaaagggatactatggacaattttcagcaagttgcagcaattaaactacagatataaccacctttccataaacaaggtctaacatcatgtttgatgcactctggatacaatgttttaaacataactgttcaaactagatgatagggacaattttcagcaagttgcagcaattgatctacagaaataaccacttttccataaacaaggtctaaaatcatgtttgatgcactctggatacaagccgcgccctcagagcatgcgcagaccagctggccggtgtgtttacggacatattcaatcaatccctataccagtctgctgttcccacatgctttaagggggccaccattgttcctgttcccaagaaagctaaggtaactgagctaaacgactaccgccccgtagcactcacatccgtcat

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU909360 False 1167 lncRNA 0.37 2 36233938 36235633
TU909366 False 757 lncRNA 0.38 4 36233938 36235633
TU909368 False 1031 lncRNA 0.37 4 36233938 36235633
TU909371 True 1031 lncRNA 0.37 2 36233938 36235633

Neighbor

gene id symbol gene type direction distance location
LOC110531157 LOC106571792 coding downstream 123894 35980798 ~ 36110044 (-)
LOC110531979 brpf1 coding downstream 254631 35948544 ~ 35979307 (-)
LOC110531978 LOC106571879 coding downstream 306225 35918737 ~ 35927713 (-)
LOC118966037 NA coding downstream 315212 35915945 ~ 35918726 (-)
LOC118966036 NA coding downstream 320100 35911525 ~ 35913838 (-)
snap29 snap29 coding upstream 58805 36294438 ~ 36318652 (-)
LOC110531936 LOC106580204 coding upstream 99751 36335384 ~ 36369350 (-)
trnag-ucc-139 NA coding upstream 225173 36460806 ~ 36460877 (-)
trnag-ucc-140 NA coding upstream 226572 36462205 ~ 36462276 (-)
trnag-ucc-141 NA coding upstream 227975 36463608 ~ 36463679 (-)
G798996 NA non-coding downstream 5445 36152448 ~ 36228493 (-)
G798997 NA non-coding downstream 21142 36172834 ~ 36212796 (-)
G798992 NA non-coding downstream 84653 36148809 ~ 36149285 (-)
G798976 NA non-coding downstream 88293 36118923 ~ 36145645 (-)
G798906 NA non-coding downstream 264656 35968087 ~ 35969282 (-)
G799019 NA non-coding upstream 8214 36243847 ~ 36244054 (-)
G799117 LOC106580207 non-coding upstream 24328 36259961 ~ 36262909 (-)
G799170 NA non-coding upstream 143742 36379375 ~ 36379691 (-)
G799192 NA non-coding upstream 180717 36416350 ~ 36416599 (-)
G799193 NA non-coding upstream 184193 36419826 ~ 36420085 (-)
G798993 NA other downstream 83301 36150338 ~ 36150637 (-)
LOC118966032 LOC106571870 other downstream 712606 35492026 ~ 35521884 (-)
LOC110531966 LOC106571884 other downstream 846806 35381661 ~ 35400349 (-)
G798195 NA other downstream 879263 35354219 ~ 35354675 (-)
LOC110531982 LOC106571893 other upstream 592263 36827882 ~ 36907700 (-)
G800318 NA other upstream 1108762 37344395 ~ 37345147 (-)
LOC110532015 LOC106566767 other upstream 2605576 38839265 ~ 38841685 (-)
G802100 NA other upstream 2730823 38966456 ~ 38996032 (-)
G802138 NA other upstream 2814897 39050530 ~ 39061381 (-)

Expression


Co-expression Network