G799026 (snap29)


Basic Information

Item Value
gene id G799026
gene name snap29
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 36303072 ~ 36303901 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU909436
TGCCAGAGTAAAGAGATAGAGGTAGGAATAAGCAGGGAGGGACTGGGCATTACTTGCTGCTGGCTTGGTAGACAACAGGCTCTTCTGGCAGGGACTTGGTGGTCTCAGGCTTGGCCTTAAAGTAAGTGACAAGGCCTCCCCACACACTCTTAATGCTGTTGATGTGTTTCTGGCTGGTTTTCAGGTCTTGGCCCATGTTGTCCACCATCCTCTCGGTCCTCTTCAGAGCCTCCCCCTGACGCATCAGCTCCTCTGCAGTCTCAGCGCCGATCTTCTCCGACTCATAAATGAGCCCCAGGGAGCGGTGGCTGCTGACCACCGCAGACTTGGCCGTACGCATCACTTCCTGTTGGAGGCATCTCTGCTTGCGCTCTGCCtcactcatccccctctcttggGGGTCGTCAAATCCCCCACTTGACCAGCGCtgctcctcctcatcatcatctgcaAATGGGTTGTGGGTTCTGGGGTACGCCATCTTTTCAACAGAACAGCAGAGTTATGACAGTGGAGA

Function

symbol description
snap29 Predicted to enable SNAP receptor activity and syntaxin binding activity. Acts upstream of or within several processes, including epidermis morphogenesis; pronephros morphogenesis; and regulation of neuron projection development. Predicted to be part of SNARE complex. Predicted to be active in plasma membrane. Used to study CEDNIK syndrome. Human ortholog(s) of this gene implicated in CEDNIK syndrome. Orthologous to human SNAP29 (synaptosome associated protein 29).

NR:

description
synaptosomal-associated protein 29

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU909436 True 517 lncRNA 0.55 2 36303072 36303901

Neighbor

gene id symbol gene type direction distance location
LOC110531941 LOC106580207 coding upstream 40148 36249344 ~ 36262924 (+)
LOC110531975 LOC106571876 coding upstream 409662 35885933 ~ 35893410 (+)
LOC110531973 LOC106571875 coding upstream 446968 35752012 ~ 35856104 (+)
LOC110531972 LOC106566626 coding upstream 558652 35666422 ~ 35744420 (+)
LOC110531971 LOC106571873 coding upstream 751095 35544777 ~ 35551977 (+)
si:dkey-7l6.3 LOC106580210 coding downstream 83017 36386918 ~ 36396094 (+)
trnap-agg-57 NA coding downstream 169006 36472907 ~ 36472978 (+)
trnap-agg-58 NA coding downstream 170235 36474136 ~ 36474207 (+)
trnap-agg-59 NA coding downstream 172869 36476770 ~ 36476841 (+)
trnap-agg-60 NA coding downstream 174100 36478001 ~ 36478072 (+)
G799011 NA non-coding upstream 65923 36236949 ~ 36237149 (+)
G798672 NA non-coding upstream 67528 36152526 ~ 36235544 (+)
G798734 NA non-coding upstream 72059 36229107 ~ 36231013 (+)
G798674 NA non-coding upstream 74474 36192219 ~ 36228598 (+)
G798673 NA non-coding upstream 83255 36172441 ~ 36219817 (+)
G799089 NA non-coding downstream 78135 36382036 ~ 36382235 (+)
G799091 NA non-coding downstream 79235 36383136 ~ 36383353 (+)
G799096 NA non-coding downstream 94300 36398201 ~ 36399373 (+)
G799094 NA non-coding downstream 95923 36399824 ~ 36402989 (+)
G799101 NA non-coding downstream 106712 36410613 ~ 36410817 (+)
G797932 pphln other upstream 930924 35364988 ~ 35372148 (+)
G797056 NA other upstream 1746450 34555931 ~ 34556622 (+)
G796495 LOC106613263 other upstream 2181332 34121422 ~ 34121740 (+)
G794886 LOC106577459 other upstream 3715684 32583606 ~ 32587388 (+)
G794893 NA other upstream 3800323 32502396 ~ 32502749 (+)
G799053 NA other downstream 9228 36313129 ~ 36316805 (+)
G799578 LOC106571900 other downstream 730517 37034418 ~ 37035918 (+)
G799858 LOC106571908 other downstream 1263344 37567245 ~ 37570411 (+)
G800834 NA other downstream 1766315 38070216 ~ 38071433 (+)
G801778 NA other downstream 2484160 38788061 ~ 38788354 (+)

Expression


Co-expression Network