G799094


Basic Information

Item Value
gene id G799094
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 36399824 ~ 36402989 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU909511
cccggtctggtcgagcctcactagccagatgaagctagctggctgcttataacgttagttttgggcaacagggttaagtagctggctagctatttattttcatgaactgaagttcaatttcaataggcgaacaacaagtggcaacccaGCTAGTacttacaaggattcctaaatcattgctaagagtaatgaaaatgactgcagtttctactggtcagtgttttcaggctggttgtattggagCTAGCTAGGTACCAGAAGTTGTGCTCtaacaaattatgctttattaccaacgcggtattgtaaacacatcgttcgtggctggtgtttgcttgtttgaagacttttgtacagctttgacagtgctactgtatattTTTGGACaggcaaagacccaaacggcgttctaTAGTATGTATGTCATGAAGCTAATAGAAGTGTGTAACTGTGTAACTCCGGtggggcaacatctgaaaaatagcgcacttggtagtgtggaccattgctcgaccagtcggcgaaagccaacatcacccacgacagagaacggttgattgtcaaaaGCAATGACTttcattatcttggctttaatggatttccctttgagttgtctcgctgaaattgtcttactctttcaaatgactgcttgacttgttgactgctcgatccacacagcagacattgtgggctaggttaggaatgctgtgttgcacgtgtagtgcaaaattttacgtggcgtcattatGTCATGTACCTGTCATGTATACATTATATAGGTATTGTCAGTACCTTTTGACATTGGTTTTTaaacatcggcgttaaactagacatcagcCAATAcagatgttggcatttttagctaatatcgtccgattccgatatgttcactgattatattgtgcatccctagttTGTATATAATaaactaaaatatcacatttagataagtattcagaccctttacccagtactttgttgacgtacctttggcggtgattacagccttgagtcgtcttgggtatgacgctacaagcttggcacacctgtatttggggagtttctcacattcttctcagcagatcctctcaagctattttcaggtctctccagagatgttcaagtccgggctctggctgggccactcaaggacattcagagacttgtcccaaagccactcctgcgctgtcttggctgtgtggttaggtTCGTTctgctgttggaaggtgaaccttcgccccagtctgaggtcctgagtgctctggagcaggttttcatcaaggatctctctgtactttgctccgttcatatttccctactagtctcccagtacctgctgctgaaaaaaatccccacagcatgatgctgccaccaccatagggatggtgccacgtttcctccagacgtgaatcTTGGCATTCCGGCcaaagttcaatcttgttttcatcaggccagagaatcttgtgtcTTATAGTCTGAGCgtctttcggtgccttttggcaaactcctccAAACGGGCTgttgtgcctttttactgaggagtggcttctaccataaaggcctgattggtggagtgctgcagagatggatgtccttctggaaggttctcacatcttcagagaaactctggagctctgtcagtgaccatcgggttcttggtcacctccctgaccaaggcccttctacccatattgctcagtttggctgggctgccagccctaggaagagtttgtggttccaatcttcttccatttaagaatgatggaggccacagtgttcttggggacctttaatgctgcggaaatgttttggtattcttcaaagtagccacccttttccttgacagctttgcacactctttgtattctctcaaccagcttcacctggaatgcttttccaacattcttgaaggagttcccacaagcTGAgtgcttgttggctgcttttccttcactttgcggtccaactcatcccaaaccatctcaattgggttgaggtcgggtgattgtggaggccaggtcatctgatgcagcactccatcactctccttcttggtcaaatggcccttacacagcctggaggtgtgttgggtcattgtcctgttgaaaaacaaatgatagtcccactaagcgcaaaccagatgggatggcgtaccgctgcagaatgctgtggtagccatgctggttaagtgtgccttgaattctaaatacatcactgatggtgtgggtctgctttgctggtgacactatcacaCATCCTTctcagtgggaaccacacatgcagagatcatccattcacctactctgcgtctcacaaaaatgcggcggttggaaccaaaaatctcaaatttggactcatctgaccaaaggacagatttccacctgtctaatgtccattgctcatgtttcttggccaaagcaagtctcttcttcttacggttttctttagtggtggtttctttgcagcaatttaaccacgaaggcctgattcacatagtctcctctgaacagttgatgttgagatgcgtctgttacttgaactctgacgcatttatttgggcaaacatttctgaggctggcaactctaattaacttatcctctacagcagaggtaactctgggtcttcctttcctgtggaggtcctcatgagagccagtttcaccatagcgcttgatgatttttgcgactgcactttttAGAAACGTTCAAGtttttgacattttccggattgactgaccttcatgtcttcaagtaattgagtgtcatttctctttgcttatttgagctgttcttgccataatttggacttggtcttttaccagatagccctatcttctgtatatcttctctaccttgtcacaacaccacctaattaagaaggaaagatcTTACACAAATTAAATTTTAACAATGCACGCCTGTTAATTGAatttcattccaggtgactacctcatgaagctggttgagagaaagccagagagtgtgcaaagttgtcatcaaggcaaagggtggctgctttgaagaatctcaaatacagagaatgcattttgatttgtttaacacttttttggttactacatgattccatatttgtttttttctaagtgttcatgtcttcactattctacaatgtataaagtagtaaaaataaaaacccttgaatgagtag
>TU909512
tgggtctgctttgctggtgacactatcacaCATCCTTctcagtgggaaccacacatgcagagatcatccattcacctactctgcgtctcacaaaaatgcggcggttggaaccaaaaatctcaaatttggactcatctgaccaaaggacagatttccacctgtctaatgtccattgctcatgtttcttggccaaagcaagtctcttcttcttacggttttctttagtggtggtttctttgcagcaatttaaccacgaaggcctgattcacatagtctcctctgaacagttgatgttgagatgcgtctgttacttgaactctgacgcatttatttgggcaaacatttctgaggctggcaactctaattaacttatcctctacagcagaggtaactctgggtcttcctttcctgtggaggtcctcatgagagccagtttcaccatagcgcttgatgatttttgcgactgcactttttAGAAACGTTCAAGtttttgacattttccggattgactgaccttcatgtcttcaagtaattgagtgtcatttctctttgcttatttgagctgttcttgccataatttggacttggtcttttaccagatagccctatcttctgtatatcttctctaccttgtcacaacaccacctaattaagaaggaaagatcTTACACAAATTAAATTTTAACAATGCACGCC
>TU909515
tgggtctgctttgctggtgacactatcacaCATCCTTctcagtgggaaccacacatgcagagatcatccattcacctactctgcgtctcacaaaaatgcggcggttggaaccaaaaatctcaaatttggactcatctgaccaaaggacagatttccacctgtctaatgtccattgctcatgtttcttggccaaagcaagtctcttcttcttacggttttctttagtggtggtttctttgcagcaatttaaccacgaaggcctgattcacatagtctcctctgaacagttgatgttgagatgcgtctgttacttgaactctgacgcatttatttgggcaaacatttctgaggctggcaactctaattaacttatcctctacagcagaggtaactctgggtcttcctttcctgtggaggtcctcatgagagccagtttcaccatagcgcttgatgatttttgcgactgcactttttAGAAACGTTCAAGtttttgacattttccggattgactgaccttcatgtcttcaagtaattgagtgtcatttctctttgcttatttgagctgttcttgccataatttggacttggtcttttaccagatagccctatcttctgtatatcttctctaccttgtcacaacaccacctaattaagaaggaaagatcTTACACAAATTAAATTTTAACAATGCACGCCTGTTAATTGAatttcattccaggtgactacctcatgaagctggttgagagaaagccagagagtgtgcaaagttgtcatcaaggcaaagggtggctgctttgaagaatctcaaatacagagaatgcattttgatttgtttaacacttttttggttactacatgattccatatttgtttttttctaagtgttcatgtcttcactattctacaatgtataaagtagtaaaaataaaaacccttgaatgagtag

Function

NR:

description
Transposable element Tc1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU909511 False 3166 lncRNA 0.44 1 36399824 36402989
TU909512 False 696 lncRNA 0.42 1 36402044 36402739
TU909515 True 946 lncRNA 0.40 1 36402044 36402989

Neighbor

gene id symbol gene type direction distance location
si:dkey-7l6.3 LOC106580210 coding upstream 3730 36386918 ~ 36396094 (+)
LOC110531941 LOC106580207 coding upstream 136900 36249344 ~ 36262924 (+)
LOC110531975 LOC106571876 coding upstream 506414 35885933 ~ 35893410 (+)
LOC110531973 LOC106571875 coding upstream 543720 35752012 ~ 35856104 (+)
LOC110531972 LOC106566626 coding upstream 655404 35666422 ~ 35744420 (+)
trnap-agg-57 NA coding downstream 69918 36472907 ~ 36472978 (+)
trnap-agg-58 NA coding downstream 71147 36474136 ~ 36474207 (+)
trnap-agg-59 NA coding downstream 73781 36476770 ~ 36476841 (+)
trnap-agg-60 NA coding downstream 75012 36478001 ~ 36478072 (+)
trnap-agg-61 NA coding downstream 76241 36479230 ~ 36479301 (+)
G799096 NA non-coding upstream 451 36398201 ~ 36399373 (+)
G799091 NA non-coding upstream 16471 36383136 ~ 36383353 (+)
G799089 NA non-coding upstream 17589 36382036 ~ 36382235 (+)
G799026 snap29 non-coding upstream 95923 36303072 ~ 36303901 (+)
G799011 NA non-coding upstream 162675 36236949 ~ 36237149 (+)
G799101 NA non-coding downstream 7624 36410613 ~ 36410817 (+)
G799200 NA non-coding downstream 43181 36446170 ~ 36459418 (+)
G799201 NA non-coding downstream 43412 36446401 ~ 36448090 (+)
G799214 NA non-coding downstream 73107 36476096 ~ 36495052 (+)
G799216 NA non-coding downstream 120395 36523384 ~ 36523664 (+)
G799053 NA other upstream 83019 36313129 ~ 36316805 (+)
G797932 pphln other upstream 1027676 35364988 ~ 35372148 (+)
G797056 NA other upstream 1843202 34555931 ~ 34556622 (+)
G796495 LOC106613263 other upstream 2278084 34121422 ~ 34121740 (+)
G794886 LOC106577459 other upstream 3812436 32583606 ~ 32587388 (+)
G799578 LOC106571900 other downstream 631429 37034418 ~ 37035918 (+)
G799858 LOC106571908 other downstream 1164256 37567245 ~ 37570411 (+)
G800834 NA other downstream 1667227 38070216 ~ 38071433 (+)
G801778 NA other downstream 2385072 38788061 ~ 38788354 (+)
G801851 NA other downstream 2529963 38932952 ~ 38933868 (+)

Expression


Co-expression Network